ggKbase home page

cn_combo_scaffold_652

Alias: GEM22_15

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_652_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(461..1240)
DNA (780bp) protein (260aa)
Integron integrase n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5ILD7_9CHRO
integron integrase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
integron integrase
cn_combo_scaffold_652_2
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1399..3897
DNA (2499bp) protein (833aa)
Vault protein, inter-alpha-trypsin domain protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FEI9_STIAD
vault protein, inter-alpha-trypsin domain-containing protein
Vault protein, inter-alpha-trypsin domain protein {ECO:0000313|EMBL:ADO75145.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae;
cn_combo_scaffold_652_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3915..4436
DNA (522bp) protein (174aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC64_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG87979.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4433..5641
DNA (1209bp) protein (403aa)
Antifreeze glycoprotein n=1 Tax=Boreogadus saida RepID=H2KMI4_BORSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG87978.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5652..8114)
DNA (2463bp) protein (821aa)
Permease n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRX4_OPITP
permease
Permease {ECO:0000313|EMBL:AHG87816.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8145..8537)
DNA (393bp) protein (131aa)
TfoX domain-containing protein
TfoX domain-containing protein {ECO:0000313|EMBL:AHG89138.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_7
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8568..8993)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGH5_THEM7
Uncharacterized protein {ECO:0000313|EMBL:ADU51627.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Ther
hypothetical protein
cn_combo_scaffold_652_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9101..10096)
DNA (996bp) protein (332aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEB4_GEMAT
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD {ECO:0000313|EMBL:AHG89141.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10207..10833
DNA (627bp) protein (209aa)
RNA polymerase sigma24 factor n=1 Tax=Nevskia ramosa RepID=UPI0003B33884
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10830..11555
DNA (726bp) protein (242aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93633.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein id=17356699 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
cn_combo_scaffold_652_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11552..12490
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU13_9GAMM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
cn_combo_scaffold_652_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12569..13108
DNA (540bp) protein (180aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93635.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13185..15692)
DNA (2508bp) protein (836aa)
TonB-dependent outer membrane transport protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAJ3_GEMAT
TonB-dependent outer membrane transport protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TonB-dependent receptor plug
cn_combo_scaffold_652_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15689..16798)
DNA (1110bp) protein (370aa)
Putative anti-sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAJ4_GEMAT
putative anti-sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
FecR protein
cn_combo_scaffold_652_15
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16955..17569
DNA (615bp) protein (205aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Algoriphagus machipongonensis RepID=A3HXR4_9BACT
RNA polymerase ECF-type sigma factor
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=GWD2_Bacteroidetes_33_33_curated
cn_combo_scaffold_652_16
unknown

Not on your lists

17621..18433
DNA (813bp) protein (271aa)

This feature has no annotations

cn_combo_scaffold_652_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18587..21169)
DNA (2583bp) protein (861aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADR7_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M10A and M12B matrixin and adamalysin
cn_combo_scaffold_652_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21297..22271)
DNA (975bp) protein (325aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89323.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein id=14632678 bin=bin9_gal15 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
cn_combo_scaffold_652_19
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

22494..23828
DNA (1335bp) protein (445aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase id=4917884 bin=GWA2_Elusimicrobia_66_18 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
class III aminotransferase Tax=GWC2_Elusimicrobia_65_9_curated
class III aminotransferase
cn_combo_scaffold_652_20
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

23863..25200
DNA (1338bp) protein (446aa)
4-aminobutyrate aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=GWA2_Elusimicrobia_69_24_curated
Acetylornithine aminotransferase id=4970915 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
acetylornithine transaminase
cn_combo_scaffold_652_21
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

25323..26771
DNA (1449bp) protein (483aa)
aromatic-L-amino-acid decarboxylase (EC:4.1.1.28)
Aromatic-L-amino-acid decarboxylase {ECO:0000313|EMBL:ABJ82176.1}; EC=4.1.1.28 {ECO:0000313|EMBL:ABJ82176.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacterac
Aromatic-L-amino-acid decarboxylase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V0_SOLUE
cn_combo_scaffold_652_22
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

26768..28210
DNA (1443bp) protein (481aa)
Succinate-semialdehyde dehydrogenase (EC:1.2.1.24)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AEB11679.1}; EC=1.2.1.24 {ECO:0000313|EMBL:AEB11679.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae;
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000378026F
cn_combo_scaffold_652_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28221..29480
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030EF16C
lytic murein transglycosylase family protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
lytic murein transglycosylase
cn_combo_scaffold_652_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(29494..31143)
DNA (1650bp) protein (550aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
Glutamine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAD4_GEMAT
Glutaminyl-tRNA synthetase
cn_combo_scaffold_652_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31373..32263)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003656F7C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90111.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_26
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(32399..32869)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADC5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40502.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_652_27
unknown

Not on your lists

comp(33104..33688)
DNA (585bp) protein (195aa)

This feature has no annotations

cn_combo_scaffold_652_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

33940..34545
DNA (606bp) protein (202aa)
Response regulator DrrA n=2 Tax=Salinibacter ruber RepID=D5HC73_SALRM id=5225675 bin=16ft_combo_ws3_JS1 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator receiver rbh
Response regulator receiver {ECO:0000313|EMBL:AHG92961.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_652_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

34550..36469
DNA (1920bp) protein (640aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UD66_MYXSD
ATP-binding region ATPase domain protein rbh
cn_combo_scaffold_652_30
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

comp(36481..37347)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RQ84_SYNP3
hypothetical protein Tax=CG_Elusi_04
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy