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cn_combo_scaffold_1256

Alias: GEM22_33

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1256_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..651)
DNA (651bp) protein (217aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ED23_RUNSL
FecR protein
FecR protein {ECO:0000313|EMBL:AHG89006.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_2
RLO_PLX_64_10, Bacteria

Not on your lists

880..1770
DNA (891bp) protein (297aa)
exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA06_GEMAT
exonuclease
cn_combo_scaffold_1256_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1842..2618)
DNA (777bp) protein (259aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA46_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative oxidoreductase
cn_combo_scaffold_1256_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2877..3761
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA47_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91737.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3805..4080
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA48_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91738.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4122..4580)
DNA (459bp) protein (153aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91739.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4622..5155)
DNA (534bp) protein (178aa)
CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PDF7_9DELT
CDP-alcohol phosphatidyltransferase
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:AHG91740.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5408..6934
DNA (1527bp) protein (509aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA50_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91742.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6931..7650
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEA7_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40834.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1256_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7705..10323)
DNA (2619bp) protein (873aa)
Peptidase S16B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA51_GEMAT
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG91744.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
peptidase M16 domain protein
cn_combo_scaffold_1256_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10377..11396)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA52_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91747.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11420..12532)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA53_GEMAT
Tetratricopeptide TPR_1 repeat-containing protein rbh
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AHG91748.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12698..13633)
DNA (936bp) protein (312aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000255|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000255|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000255|HAMAP-Rule:MF_01876};; TaxID=379066 speci
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PSUG_GEMAT
putative indigoidine systhesis protein IndA
cn_combo_scaffold_1256_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13630..14550)
DNA (921bp) protein (307aa)
Putative beta-lactamase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACM4_GEMAT
putative beta-lactamase precursor
Putative beta-lactamase {ECO:0000313|EMBL:AHG91757.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14547..14780)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA55_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91758.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15146..15490
DNA (345bp) protein (115aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91761.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15498..16520)
DNA (1023bp) protein (341aa)
Peptidase M20A family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A413_GEMAT
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:AHG91763.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16614..16886)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AD18_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93410.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17059..19827
DNA (2769bp) protein (923aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Ge
citB; aconitate hydratase (EC:4.2.1.3) rbh
Aconitate hydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA64_GEMAT
cn_combo_scaffold_1256_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19973..20905
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA66_GEMAT id=5223807 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein; K07029 Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
cn_combo_scaffold_1256_21
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20902..21423)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA67_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39665.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_1256_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21726..21968
DNA (243bp) protein (81aa)
putative peroxiredoxin (EC:1.11.1.15) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative peroxiredoxin (EC:1.11.1.15)
Putative peroxiredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA68_GEMAT
cn_combo_scaffold_1256_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21978..22313
DNA (336bp) protein (112aa)
putative peroxiredoxin (EC:1.11.1.15)
Putative peroxiredoxin {ECO:0000313|EMBL:BAH39666.1}; EC=1.11.1.15 {ECO:0000313|EMBL:BAH39666.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;
Putative peroxiredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA68_GEMAT
cn_combo_scaffold_1256_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22417..23757
DNA (1341bp) protein (447aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81] id=14632022 bin=bin9_gal15 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
protein of unknown function DUF4147
Uncharacterized protein {ECO:0000313|EMBL:AHG91771.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_25
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23805..24737
DNA (933bp) protein (311aa)
aguB; N-carbamoylputrescine amidohydrolase (EC:3.5.1.53); K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] id=12556138 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
aguB; N-carbamoylputrescine amidohydrolase (EC:3.5.1.53)
N-carbamoylputrescine amidohydrolase {ECO:0000313|EMBL:BAH39669.1}; EC=3.5.1.53 {ECO:0000313|EMBL:BAH39669.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; G
cn_combo_scaffold_1256_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24872..25942
DNA (1071bp) protein (357aa)
aguA; agmatine deiminase (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12] id=12556139 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Porphyromonas-type peptidyl-arginine deiminase rbh
Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313|EMBL:AHG91773.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_1256_27
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26097..27209
DNA (1113bp) protein (371aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GM90_9DELT
Branched-chain amino acid ABC transporter, amino acid-binding protein {ECO:0000313|EMBL:KHK04288.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovi
ABC transporter substrate binding protein precursor
cn_combo_scaffold_1256_28
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27206..28921
DNA (1716bp) protein (572aa)
Methyl-accepting chemotaxis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5N4_GEMAT
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:BAH37544.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiac
cn_combo_scaffold_1256_29
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29022..29831)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003797C25
hypothetical protein Tax=GWF2_Bacteroidetes_38_335_curated
cn_combo_scaffold_1256_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29913..30704
DNA (792bp) protein (264aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine
7-cyano-7-deazaguanine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA81_GEMAT
7-cyano-7-deazaguanine synthase rbh
Displaying items 1-30 of 51 in total

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