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cn_combo_scaffold_422

Alias: GEM22_9

Search features with annotation key words

Displaying items 31-60 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_422_31
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(45447..46622)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371D292
peptidase M19, renal dipeptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M19, renal dipeptidase
cn_combo_scaffold_422_32
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(46699..49191)
DNA (2493bp) protein (831aa)
PAS domain S-box {ECO:0000313|EMBL:CDM65019.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
multi-sensor hybrid histidine kinase id=14628473 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
sensor histidine kinase with a response regulator receiver domain
cn_combo_scaffold_422_33
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

49390..51063
DNA (1674bp) protein (558aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADP2_GEMAT
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAH40619.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
cn_combo_scaffold_422_34
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

51734..52333
DNA (600bp) protein (200aa)
Putative FMN dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M331_RHIL3
NADPH-dependent FMN reductase rbh
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AHG92821.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_35
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

52415..52879
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQG8_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB47360.1}; TaxID=1434099 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
cn_combo_scaffold_422_36
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

53064..55148
DNA (2085bp) protein (695aa)
Copper-transporting ATPase {ECO:0000313|EMBL:BAH38368.1}; EC=3.6.3.4 {ECO:0000313|EMBL:BAH38368.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
copper-transporting ATPase (EC:3.6.3.4)
Copper-transporting ATPase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A808_GEMAT
cn_combo_scaffold_422_37
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

55411..55905
DNA (495bp) protein (165aa)
membrane protein n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B590AB
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:AHG88361.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_38
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

55957..56616
DNA (660bp) protein (220aa)
reduced coenzyme F420:NADP oxidoreductase (EC:1.6.99.-)
Reduced coenzyme F420:NADP oxidoreductase {ECO:0000313|EMBL:ABG04752.1}; EC=1.6.99.- {ECO:0000313|EMBL:ABG04752.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rub
Reduced coenzyme F420:NADP oxidoreductase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV26_RUBXD
cn_combo_scaffold_422_39
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

56673..57443
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNF9_SOLCM
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AFD07957.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadens
cn_combo_scaffold_422_40
Arthrobacter aurescens, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57713..58468
DNA (756bp) protein (252aa)
short-chain dehydrogenase n=1 Tax=Pseudoclavibacter faecalis RepID=UPI0003679D81
short chain dehydrogenase/reductase (SDR) family protein rbh
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:ABM06667.1}; TaxID=290340 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrob
cn_combo_scaffold_422_41
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(58491..59051)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI000374F56D
hypothetical protein Tax=RBG_16_Chloroflexi_57_11_curated
hypothetical protein
cn_combo_scaffold_422_42
unknown

Not on your lists

59605..60675
DNA (1071bp) protein (357aa)

This feature has no annotations

cn_combo_scaffold_422_43
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

60826..61143
DNA (318bp) protein (106aa)
Transcriptional regulator, PadR-like family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIM0_9BACT
transcriptional regulator, PadR-family
Transcriptional regulator, PadR-family {ECO:0000313|EMBL:AHG87873.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_44
Pseudoalteromonas tunicata, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61436..62350)
DNA (915bp) protein (305aa)
dithiol-disulfide isomerase id=12557701 bin=CNBR_ACIDO species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EAR30746.1}; TaxID=87626 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoa
DSBA oxidoreductase
cn_combo_scaffold_422_45
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(62394..62864)
DNA (471bp) protein (157aa)
MarR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4Q0_GEMAT
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAH37210.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auranti
cn_combo_scaffold_422_46
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62980..63888)
DNA (909bp) protein (303aa)
universal stress family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744DF1
Universal stress protein UspA {ECO:0000313|EMBL:KFE69545.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source
universal stress family protein
cn_combo_scaffold_422_47
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(63952..64899)
DNA (948bp) protein (316aa)
UspA domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQG9_ROSCS
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ABU59815.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenh
cn_combo_scaffold_422_48
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(65093..66700)
DNA (1608bp) protein (536aa)
Peptide chain release factor 3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB60_GEMAT
prfC; peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmat
cn_combo_scaffold_422_49
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

67005..69665
DNA (2661bp) protein (887aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7A2_GEMAT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AHG89541.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_50
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

70034..71488
DNA (1455bp) protein (485aa)
Outer membrane efflux protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB96_ANADF
outer membrane efflux protein rbh
Outer membrane efflux protein {ECO:0000313|EMBL:AHG93662.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_51
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

71485..72624
DNA (1140bp) protein (380aa)
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG93661.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Efflux transporter, RND family, MFP subunit id=4571491 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cn_combo_scaffold_422_52
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72621..75797
DNA (3177bp) protein (1059aa)
Acriflavin resistance protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LFE9_SYNFM
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RBG_16_Deltaproteobacteria_64_85_curated
acriflavin resistance protein
cn_combo_scaffold_422_53
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(75935..78202)
DNA (2268bp) protein (756aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACQ0_GEMAT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAH40277.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_422_54
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

78549..80762
DNA (2214bp) protein (738aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ38_9SPHN
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
TonB-dependent receptor plug
cn_combo_scaffold_422_55
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

80881..82719
DNA (1839bp) protein (613aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=24418872 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
cn_combo_scaffold_422_56
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(82780..83817)
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
hypothetical protein id=24414041 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Haloterrigena turkmenica genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
cn_combo_scaffold_422_57
unknown

Not on your lists

84024..84755
DNA (732bp) protein (244aa)

This feature has no annotations

cn_combo_scaffold_422_58
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

84856..85419
DNA (564bp) protein (188aa)
Thioredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9K6_GEMAT
thioredoxin
Thioredoxin {ECO:0000313|EMBL:BAH39183.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 145
cn_combo_scaffold_422_59
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

85598..87763
DNA (2166bp) protein (722aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QN89_SPILD
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:CDM65232.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylal
peptidase S9 prolyl oligopeptidase active site domain-containing protein
cn_combo_scaffold_422_60

Not on your lists

comp(87809..88564)
DNA (756bp) protein (252aa)
DsbA oxidoreductase id=31251 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
DsbA oxidoreductase {ECO:0000313|EMBL:EKD93029.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DSBA oxidoreductase
Displaying items 31-60 of 100 in total

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