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cn_combo_scaffold_422

Alias: GEM22_9

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_422_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1..1311
DNA (1311bp) protein (437aa)
recB; exodeoxyribonuclease V beta subunit (EC:3.1.11.5)
Exodeoxyribonuclease V beta subunit {ECO:0000313|EMBL:BAH40218.1}; EC=3.1.11.5 {ECO:0000313|EMBL:BAH40218.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Ge
Exodeoxyribonuclease V beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACJ1_GEMAT
cn_combo_scaffold_422_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1308..3092
DNA (1785bp) protein (595aa)
Exodeoxyribonuclease V alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACJ0_GEMAT
recD; exodeoxyribonuclease V alpha subunit
Exodeoxyribonuclease V alpha subunit {ECO:0000313|EMBL:BAH40217.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantia
cn_combo_scaffold_422_3
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3085..5316
DNA (2232bp) protein (744aa)
Putative proteasome accessory factor BC n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QMV4_ARTGO
Transcriptional regulator-like protein {ECO:0000313|EMBL:CCQ46304.1}; TaxID=861266 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.
transcripitonal regulator
cn_combo_scaffold_422_4

Not on your lists

5405..5797
DNA (393bp) protein (131aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BJJ1_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48949.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cn_combo_scaffold_422_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5909..6451
DNA (543bp) protein (181aa)
id=12557778 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cn_combo_scaffold_422_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6953..9118)
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A769_GEMAT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAH38079.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_422_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9396..9920
DNA (525bp) protein (175aa)
Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6L8_GEMAT
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:AHG88012.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9943..12582
DNA (2640bp) protein (880aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAH37879.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAH37879.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadacea
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6L9_GEMAT
cn_combo_scaffold_422_9
RIFOXYA2_FULL_Ignavibacteria_37_17_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(12693..13274)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFOXYA2_FULL_Ignavibacteria_37_17_curated
cn_combo_scaffold_422_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13519..16224
DNA (2706bp) protein (902aa)
membrane protein; K09118 hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
UPF0182 protein DAMO_1249 id=2534586 bin=GWC2_CP_Nitrospirae-rel_42_7 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
cn_combo_scaffold_422_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16666..19884
DNA (3219bp) protein (1073aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020Y7_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89180.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_12
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19957..21198)
DNA (1242bp) protein (414aa)
Cardiolipin synthetase {ECO:0000313|EMBL:ESR27395.1}; EC=2.7.8.- {ECO:0000313|EMBL:ESR27395.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibac
cardiolipin synthetase (EC:2.7.8.-)
Cardiolipin synthetase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RWM0_9RHIZ
cn_combo_scaffold_422_13
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21198..22502)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U9B0_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AKF10323.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
hypothetical protein
cn_combo_scaffold_422_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

22651..23580
DNA (930bp) protein (310aa)
fabI; enoyl-(acyl carrier protein) reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
fabI; enoyl-(acyl carrier protein) reductase (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ6_GEMAT
cn_combo_scaffold_422_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23603..24763)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW0_GEMAT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAH39366.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_422_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24979..27237
DNA (2259bp) protein (753aa)
Glutamate carboxypeptidase II n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XS4_SOLUE
Transferrin receptor domain protein dimerization region
Transferrin receptor domain protein dimerization region {ECO:0000313|EMBL:AHG92293.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27234..28952
DNA (1719bp) protein (573aa)
N-acyl-D-aspartate/D-glutamate deacylase n=2 Tax=Singulisphaera acidiphila RepID=L0DJD3_SINAD
D-aminoacylase domain protein
D-aminoacylase domain protein {ECO:0000313|EMBL:AHG89239.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29250..32030
DNA (2781bp) protein (927aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAH39692.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAH39692.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadacea
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA94_GEMAT
cn_combo_scaffold_422_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(32059..33306)
DNA (1248bp) protein (416aa)
Peptidase M20D family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A988_GEMAT
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AHG93497.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_20
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(33299..34420)
DNA (1122bp) protein (374aa)
menC; O-succinylbenzoate synthase (EC:4.2.1.113) rbh
o-succinylbenzoate synthase {ECO:0000256|HAMAP-Rule:MF_01933}; Short=OSB synthase {ECO:0000256|HAMAP-Rule:MF_01933};; Short=OSBS {ECO:0000256|HAMAP-Rule:MF_01933};; EC=4.2.1.113 {ECO:0000256|HAMAP-Rul
O-succinylbenzoate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A995_GEMAT
cn_combo_scaffold_422_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(34466..35284)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A994_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93617.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

35428..36144
DNA (717bp) protein (239aa)
GntR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A992_GEMAT
GntR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GntR family transcriptional regulator
cn_combo_scaffold_422_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

36195..37937
DNA (1743bp) protein (581aa)
D-aminoacylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A989_GEMAT
D-aminoacylase domain protein
D-aminoacylase domain protein {ECO:0000313|EMBL:AHG93631.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

38014..39594
DNA (1581bp) protein (527aa)
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AHG93624.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Beta-lactamase id=4183595 bin=GWA2_Ignavibacteria_55_11 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
cn_combo_scaffold_422_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(39728..40708)
DNA (981bp) protein (327aa)
1-aminocyclopropane-1-carboxylate deaminase (EC:3.5.99.7); K05396 D-cysteine desulfhydrase [EC:4.4.1.15] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
1-aminocyclopropane-1-carboxylate deaminase (EC:3.5.99.7); K05396 D-cysteine desulfhydrase [EC:4.4.1.15] id=12554706 bin=CNBR_ACIDO species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyridoxal-phosphate dependent protein
cn_combo_scaffold_422_26
unknown

Not on your lists

40994..41809
DNA (816bp) protein (272aa)

This feature has no annotations

cn_combo_scaffold_422_27
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

41915..42487
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ2_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40629.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_422_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

42507..44006
DNA (1500bp) protein (500aa)
Putative decarboxylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADP8_GEMAT
Pyridoxal-dependent decarboxylase
Pyridoxal-dependent decarboxylase {ECO:0000313|EMBL:AHG88429.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(44126..44638)
DNA (513bp) protein (171aa)
Thioredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADP5_GEMAT
Redoxin domain protein
Redoxin domain protein {ECO:0000313|EMBL:AHG89253.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_422_30
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(44680..45402)
DNA (723bp) protein (241aa)
Thiol--disulfide interchange protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADP4_GEMAT
thiol--disulfide interchange protein
Thiol--disulfide interchange protein {ECO:0000313|EMBL:BAH40621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantia
Displaying items 1-30 of 100 in total

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