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cn_combo_scaffold_2025

Alias: GEM22_41

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2025_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3..2084
DNA (2082bp) protein (694aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C2_GEMAT
Helicase superfamily 1 UvrD-related protein rbh
cn_combo_scaffold_2025_2
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2120..2839)
DNA (720bp) protein (240aa)
coagulation factor 5/8 type domain-containing protein (EC:2.7.10.1)
Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) RepID=S8BZ32_DACHA
Two-component response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:CCH18189.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporac
cn_combo_scaffold_2025_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2898..4040)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6C0_GEMAT
aminopeptidase
Aminopeptidase {ECO:0000313|EMBL:AHG90195.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4193..7702
DNA (3510bp) protein (1170aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.
DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B9_GEMAT
DNA polymerase III, alpha subunit rbh
cn_combo_scaffold_2025_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7705..8673
DNA (969bp) protein (323aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ACCA_GEMAT
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
cn_combo_scaffold_2025_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8941..10566
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B7_GEMAT
PSP1 domain protein
PSP1 domain protein {ECO:0000313|EMBL:AHG90191.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


10563..12101
DNA (1539bp) protein (513aa)
Methionyl-tRNA synthetase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B6_GEMAT
methionyl-tRNA synthetase rbh
Methionyl-tRNA synthetase {ECO:0000313|EMBL:AHG90190.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_8
unknown

Not on your lists

12225..12743
DNA (519bp) protein (173aa)

This feature has no annotations

cn_combo_scaffold_2025_9
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12862..14427)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TSE0_MARTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADR22857.1}; Flags: Precursor;; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga trac
cn_combo_scaffold_2025_10
RBG_13_Bacteroidetes_43_22_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14460..17561)
DNA (3102bp) protein (1034aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003782CED
tonb-dependent receptor Tax=RBG_13_Bacteroidetes_43_22_curated
tonb-dependent receptor plug
cn_combo_scaffold_2025_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17810..18631
DNA (822bp) protein (274aa)
TonB-denpendent receptor n=1 Tax=Alistipes sp. JC136 RepID=UPI00028970E7
Tax=RBG_16_Gemmatimonadetes_66_8_curated
cn_combo_scaffold_2025_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18656..22411)
DNA (3756bp) protein (1252aa)
hypothetical protein n=3 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00037B450D
ASPIC/UnbV domain protein {ECO:0000313|EMBL:AHG89290.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ASPIC/UnbV domain protein
cn_combo_scaffold_2025_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22408..23859)
DNA (1452bp) protein (484aa)
PAP2 superfamily protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJV3_9BURK
PAP2 superfamily protein {ECO:0000313|EMBL:EHR70661.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSH
PAP2 superfamily protein
cn_combo_scaffold_2025_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23993..24712
DNA (720bp) protein (240aa)
Protein-disulfide isomerase n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RUW6_CENSY
protein-disulfide isomerase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein-disulfide isomerase
cn_combo_scaffold_2025_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24775..25335)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B1_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37771.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_2025_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25410..26138)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6B0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90181.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(26140..26880)
DNA (741bp) protein (247aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6A9_GEMAT
protein of unknown function DUF477
Uncharacterized protein {ECO:0000313|EMBL:AHG90180.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27187..27894
DNA (708bp) protein (236aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6A8_GEMAT
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AHG90179.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_2025_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27899..29182
DNA (1284bp) protein (428aa)
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6A7_GEMAT
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein rbh
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein {ECO:0000313|EMBL:AHG90178.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.
Displaying 19 items

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