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ACD28_44

Alias: ACD28_13288.19020.11

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_44_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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1..420
DNA (420bp) protein (140aa)
pyrC; dihydroorotase
seg (db=Seg db_id=seg from=118 to=133)
DIHYDROOROTASE (db=HMMPanther db_id=PTHR11647:SF5 from=1 to=119 evalue=1.5e-36)
AMINOHYDROLASE (db=HMMPanther db_id=PTHR11647 from=1 to=119 evalue=1.5e-36)
ACD28_44_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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461..907
DNA (447bp) protein (149aa)
dihydroorotase (EC:3.5.2.3)
seg (db=Seg db_id=seg from=28 to=36)
DIHYDROOROTASE_2 (db=PatternScan db_id=PS00483 from=3 to=14 evalue=0.0 interpro_id=IPR002195 interpro_description=Dihydroorotase, conserved site GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides (GO:0016812))
DIHYDROOROTASE (db=HMMPanther db_id=PTHR11647:SF5 from=1 to=148 evalue=3.0e-43)
ACD28_44_3

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907..1914
DNA (1008bp) protein (336aa)
dihydroorotate dehydrogenase fumarate (EC:1.3.98.1)
Similar to dihydroorotate oxidase (Dihydroorotate dehydrogenase B) catalytic subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4L5_9BACT (db=UNIREF evalue=1.0e-67 bit_score=260.0 identity=44.87 coverage=88.9880952380952)
DHODEHASE_2 (db=PatternScan db_id=PS00912 from=269 to=289 evalue=0.0 interpro_id=IPR001295 interpro_description=Dihydroorotate dehydrogenase, conserved site GO=Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207), Biological Process: oxidation reduction (GO:0055114))
pyrD_sub1_fam: dihydroorotate dehydroge (db=HMMTigr db_id=TIGR01037 from=23 to=333 evalue=1.0e-106 interpro_id=IPR005720 interpro_description=Dihydroorotate dehydrogenase, class 1, core GO=Molecular Function: dihydroorotate oxidase activity (GO:0004158), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207), Biological Process: oxidation reduction (GO:0055114))
ACD28_44_4

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1933..2817
DNA (885bp) protein (295aa)
dihydroorotate dehydrogenase electron transfer subunit
Cytochrome-c3 hydrogenase, gamma subunit (db=HMMPIR db_id=PIRSF006816 from=31 to=281 evalue=1.0e-72 interpro_id=IPR012165 interpro_description=Cytochrome-c3 hydrogenase, gamma subunit GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: FAD binding (GO:0050660), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
Ferredoxin reductase-like, C-terminal NADP-linked domain (db=superfamily db_id=SSF52343 from=115 to=276 evalue=1.0e-32)
no description (db=Gene3D db_id=G3DSA:3.40.50.80 from=119 to=238 evalue=5.3e-24)
ACD28_44_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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2880..3560
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLE6_9BACT (db=UNIREF evalue=1.0e-56 bit_score=222.0 identity=46.22 coverage=97.7973568281938)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
pyrE: orotate phosphoribosyltransferase (db=HMMTigr db_id=TIGR00336 from=12 to=194 evalue=1.1e-58 interpro_id=IPR004467 interpro_description=Orotate phosphoribosyl transferase GO=Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221))
no description (db=Gene3D db_id=G3DSA:3.40.50.2020 from=3 to=226 evalue=1.2e-53)
ACD28_44_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(3939..4133)
DNA (195bp) protein (65aa)
3939..4133 - (rbs_motif=TAA rbs_spacer=11bp)
Conserved uncharacterized protein Tax=GWA2_PER_44_7
ACD28_44_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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4501..5499
DNA (999bp) protein (333aa)
orotidine 5''-phosphate decarboxylase, subfamily 2
orotidine 5''-phosphate decarboxylase, subfamily 2
Orotidine 5'-phosphate decarboxylase n=3 Tax=Clostridium thermocellum RepID=A3DE06_CLOTH (db=UNIREF evalue=7.0e-83 bit_score=311.0 identity=56.94 coverage=82.8828828828829)
seg (db=Seg db_id=seg from=314 to=327)
ACD28_44_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(5507..6280)
DNA (774bp) protein (258aa)
dimethyladenosine transferase (EC:2.1.1.48)
coiled-coil (db=Coil db_id=coil from=209 to=230 evalue=NA)
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=33 to=60 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ksgA: dimethyladenosine transferase (db=HMMTigr db_id=TIGR00755 from=1 to=257 evalue=5.3e-81 interpro_id=IPR011530 interpro_description=Ribosomal RNA adenine dimethylase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433))
ACD28_44_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(6270..6509)
DNA (240bp) protein (80aa)
UPF0235 protein VDG1235_2232 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQM1_9BACT (db=UNIREF evalue=1.0e-10 bit_score=68.9 identity=45.07 coverage=87.5)
hypothetical protein
DUF167 (db=HMMPfam db_id=PF02594 from=5 to=77 evalue=2.7e-24 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
YggU-like (db=superfamily db_id=SSF69786 from=5 to=78 evalue=1.3e-17 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
ACD28_44_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(6502..9255)
DNA (2754bp) protein (918aa)
cation transport ATPase
cation transport ATPase
Calcium-translocating P-type ATPase, PMCA-type n=7 Tax=Thermoanaerobacter RepID=B0K4E0_THEPX (db=UNIREF evalue=0.0 bit_score=750.0 identity=44.77 coverage=96.8409586056645)
transmembrane_regions (db=TMHMM db_id=tmhmm from=696 to=718)
ACD28_44_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(9589..10260)
DNA (672bp) protein (224aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=1 to=221 evalue=1.4e-106 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
tRNA-(m1G37) methyltransferase (db=HMMPIR db_id=PIRSF000386 from=1 to=222 evalue=2.3e-97 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
alpha/beta knot (db=superfamily db_id=SSF75217 from=1 to=221 evalue=1.1e-79)
ACD28_44_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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10349..11167
DNA (819bp) protein (273aa)
seg (db=Seg db_id=seg from=36 to=46)
hypothetical protein Tax=GWA2_PER_44_7
Suspect ribosomal protein S9 here based on reassembly: >scaffold_6_1 # 20 # 475 # -1 # ;gc_cont=0.443 MAKKKSSDTNPAPTETKGLTFSGRYHYANGKRKNAVARIRLYENGQGRIIVNGKPYKDYL TIPETYEIVQTPLRLTNKLKDFDIEARVQGGGSHAQSEAIRHGISKALQIMDPELRPTLK KAGLLTRDSRIKERKKYGLKRARRAPQFSKR* Jill Banfield (11/15/12)
ACD28_44_13
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(11880..12326)
DNA (447bp) protein (149aa)
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDZ2_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=55.73 coverage=87.248322147651)
seg (db=Seg db_id=seg from=114 to=127)
RIBOSOMAL_L13 (db=PatternScan db_id=PS00783 from=110 to=132 evalue=0.0 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD28_44_14

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comp(12357..12728)
DNA (372bp) protein (124aa)
50S ribosomal protein L17
50S ribosomal protein L17 n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEC2_9SPHN (db=UNIREF evalue=1.0e-13 bit_score=78.6 identity=50.82 coverage=92.741935483871)
seg (db=Seg db_id=seg from=32 to=50)
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD28_44_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(12747..13739)
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
seg (db=Seg db_id=seg from=46 to=57)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=22 to=323 evalue=1.8e-102 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=22 to=228 evalue=2.1e-62 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD28_44_16
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(13808..13909)
DNA (102bp) protein (34aa)
13808..13909 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_44_17
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(13928..14548)
DNA (621bp) protein (207aa)
30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI05_CLOAI (db=UNIREF evalue=1.0e-45 bit_score=186.0 identity=49.51 coverage=98.5507246376812)
seg (db=Seg db_id=seg from=87 to=97)
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=93 to=117 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
ACD28_44_18
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(14585..14992)
DNA (408bp) protein (136aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=49 to=64)
seg (db=Seg db_id=seg from=2 to=18)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=103 to=125 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
ACD28_44_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(15026..15409)
DNA (384bp) protein (128aa)
30S ribosomal protein S13
seg (db=Seg db_id=seg from=107 to=123)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=87 to=100 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=114 evalue=2.1e-65 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD28_44_20

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comp(15573..15857)
DNA (285bp) protein (95aa)
translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=2 to=75 evalue=2.7e-33 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=75 evalue=4.3e-24 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=75 evalue=2.0e-21 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD28_44_21

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comp(16004..16978)
DNA (975bp) protein (325aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=6 to=12)
Pili subunits (db=superfamily db_id=SSF54523 from=19 to=72 evalue=4.3e-08)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=16 to=39 evalue=0.027 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD28_44_22

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comp(16996..17124)
DNA (129bp) protein (43aa)
UPF0150 (db=HMMPfam db_id=PF03681 from=5 to=39 evalue=1.5e-09 interpro_id=IPR005357 interpro_description=Uncharacterised protein family UPF0150)
TTHA1013-like (db=superfamily db_id=SSF143100 from=4 to=39 evalue=7.2e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKD93898.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_44_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(17244..17591)
DNA (348bp) protein (116aa)
17244..17591 - (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_44_24
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(17625..18386)
DNA (762bp) protein (254aa)
methionine aminopeptidase
met_pdase_I: methionine aminopeptidase, t (db=HMMTigr db_id=TIGR00500 from=2 to=251 evalue=4.7e-92 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
no description (db=Gene3D db_id=G3DSA:3.90.230.10 from=1 to=249 evalue=6.7e-77 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=54 to=249 evalue=7.8e-75 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
ACD28_44_25
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(18386..19057)
DNA (672bp) protein (224aa)
adenylate kinase
ADENYLATE_KINASE (db=PatternScan db_id=PS00113 from=88 to=99 evalue=0.0 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=10 to=220 evalue=2.3e-48)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=7 to=216 evalue=6.1e-44 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
LINKS TO START ACD28_15860 based on reassembly Jill Banfield (11/15/12)
Displaying 25 items

View Taxonomy