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ACD28_69

Alias: ACD28_45336.15019.11

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_69_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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1..423
DNA (423bp) protein (141aa)
ornithine carbamoyltransferase
ORNITHINE CARBAMOYLTRANSFERASE (db=HMMPanther db_id=PTHR11405:SF1 from=1 to=135 evalue=2.5e-35)
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=1 to=135 evalue=2.5e-35)
Aspartate/ornithine carbamoyltransferase (db=superfamily db_id=SSF53671 from=1 to=136 evalue=3.4e-34 interpro_id=IPR006130 interpro_description=Aspartate/ornithine carbamoyltransferase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: amino acid binding (GO:0016597), Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743))
ACD28_69_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

413..1444
DNA (1032bp) protein (344aa)
hypothetical protein
seg (db=Seg db_id=seg from=33 to=41)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=149 to=263 evalue=1.8e-07)
Uncharacterized protein {ECO:0000313|EMBL:KKT72937.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
ACD28_69_3
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1429..2385
DNA (957bp) protein (319aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
argC: N-acetyl-gamma-glutamyl-phosphate redu (db=HMMTigr db_id=TIGR01850 from=5 to=318 evalue=7.1e-104 interpro_id=IPR000706 interpro_description=N-acetyl-gamma-glutamyl-phosphate reductase GO=Molecular Function: N-acetyl-gamma-glutamyl-phosphate reductase activity (GO:0003942), Biological Process: arginine biosynthetic process (GO:0006526))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=164 evalue=2.3e-41)
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (db=superfamily db_id=SSF55347 from=133 to=285 evalue=3.5e-38)
ACD28_69_4

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2396..3559
DNA (1164bp) protein (388aa)
Aminotransferase class-III n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH56_RHOM4 (db=UNIREF evalue=2.0e-84 bit_score=316.0 identity=41.32 coverage=96.6494845360825)
class III aminotransferase
class III aminotransferase
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=213 to=250 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD28_69_5

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3556..4383
DNA (828bp) protein (276aa)
acetylglutamate kinase (EC:2.7.2.8)
seg (db=Seg db_id=seg from=224 to=235)
N-acetylglutamate kinase (db=HMMPIR db_id=PIRSF000728 from=1 to=275 evalue=1.3e-89 interpro_id=IPR011148 interpro_description=N-acetylglutamate kinase GO=Molecular Function: acetylglutamate kinase activity (GO:0003991), Biological Process: cellular amino acid biosynthetic process (GO:0008652))
argB: acetylglutamate kinase (db=HMMTigr db_id=TIGR00761 from=19 to=251 evalue=7.0e-71 interpro_id=IPR004662 interpro_description=Acetylglutamate kinase GO=Molecular Function: acetylglutamate kinase activity (GO:0003991), Cellular Component: cytoplasm (GO:0005737), Biological Process: arginine biosynthetic process (GO:0006526))
ACD28_69_6

Not on your lists

4401..5273
DNA (873bp) protein (291aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y503_9GAMM (db=UNIREF evalue=4.0e-18 bit_score=95.5 identity=29.54 coverage=90.7216494845361)
succinylglutamate desuccinylase / aspartoacylase
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=12 to=289 evalue=1.6e-36)
AstE_AspA (db=HMMPfam db_id=PF04952 from=17 to=181 evalue=5.6e-22 interpro_id=IPR007036 interpro_description=Succinylglutamate desuccinylase/aspartoacylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase EC:3.5.1.15 which cleaves acylaspartate into a fatty acid and aspartate. Jill Banfield (11/15/12)
ACD28_69_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

5291..6601
DNA (1311bp) protein (437aa)
Argininosuccinate lyase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CE80_THET1 (db=UNIREF evalue=2.0e-109 bit_score=399.0 identity=45.06 coverage=99.0846681922197)
argininosuccinate lyase (EC:4.3.2.1)
argininosuccinate lyase (EC:4.3.2.1)
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=278 to=287 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
ACD28_69_8

Not on your lists

comp(6998..7498)
DNA (501bp) protein (167aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
Uncharacterized protein {ECO:0000313|EMBL:EKD92991.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_69_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

7750..8448
DNA (699bp) protein (233aa)
ABC transporter related protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QK23_SPILD (db=UNIREF evalue=6.0e-91 bit_score=337.0 identity=68.42 coverage=97.4248927038627)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=128 to=142 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ACD28_69_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

8445..10226
DNA (1782bp) protein (594aa)
ABC transporter
ABC transporter
ABC transporter related protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QK24_SPILD (db=UNIREF evalue=0.0 bit_score=690.0 identity=58.35 coverage=98.6531986531986)
seg (db=Seg db_id=seg from=20 to=36)
ACD28_69_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

10292..10531
DNA (240bp) protein (80aa)
Antitoxin of YafQ-DinJ toxin-antitoxin system n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MLB7_9BACT (db=UNIREF evalue=3.0e-09 bit_score=64.3 identity=52.08 coverage=58.75)
hypothetical protein
seg (db=Seg db_id=seg from=67 to=79)
RelB (db=HMMPfam db_id=PF04221 from=6 to=54 evalue=1.0e-12 interpro_id=IPR007337 interpro_description=RelB antitoxin)
ACD28_69_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

10533..10808
DNA (276bp) protein (92aa)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=88 evalue=3.9e-12)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_69_13

Not on your lists

comp(10818..11075)
DNA (258bp) protein (86aa)
endonuclease
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=74 evalue=7.9e-13 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=5 to=69 evalue=1.9e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR20208 from=3 to=49 evalue=0.00031)
ACD28_69_14
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(11259..11786)
DNA (528bp) protein (176aa)
thioredoxin protein
coiled-coil (db=Coil db_id=coil from=42 to=63 evalue=NA)
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=85 to=103 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=62 to=174 evalue=1.6e-22 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD28_69_15

Not on your lists

11870..12589
DNA (720bp) protein (240aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGX2_9ACTN (db=UNIREF evalue=2.0e-28 bit_score=129.0 identity=41.67 coverage=95.0)
seg (db=Seg db_id=seg from=197 to=211)
seg (db=Seg db_id=seg from=161 to=172)
seg (db=Seg db_id=seg from=45 to=58)
ACD28_69_16

Not on your lists

comp(12586..12858)
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=21 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
Uncharacterized protein {ECO:0000313|EMBL:EKD92981.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_69_17
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

12985..13476
DNA (492bp) protein (164aa)
nuclear protein SET
Nuclear protein SET n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVW1_9EURY (db=UNIREF evalue=1.0e-20 bit_score=102.0 identity=34.48 coverage=85.3658536585366)
SET domain (db=superfamily db_id=SSF82199 from=13 to=127 evalue=1.5e-23)
no description (db=HMMSmart db_id=SM00317 from=4 to=112 evalue=6.5e-10 interpro_id=IPR001214 interpro_description=SET domain)
ACD28_69_18
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

13481..13753
DNA (273bp) protein (91aa)
hypothetical protein
DUF156 (db=HMMPfam db_id=PF02583 from=6 to=83 evalue=3.8e-26 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
Putative uncharacterized protein Tax=GWA2_PER_44_7
hypothetical protein alias=ACD28_C00069G00018,ACD28_45336.15019.11G0018,ACD28_45336.15019.11_18 id=31553 tax=ACD28 species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=PER organism_desc=PER
ACD28_69_19
R_OD1_53_13, Parcubacteria, Bacteria

Not on your lists

13824..15056
DNA (1233bp) protein (411aa)
Multicopper oxidase family protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=A9QPE9_METI4 (db=UNIREF evalue=9.0e-75 bit_score=284.0 identity=40.35 coverage=76.6423357664234)
putative Multicopper oxidase
seg (db=Seg db_id=seg from=390 to=411)
Cupredoxins (db=superfamily db_id=SSF49503 from=63 to=175 evalue=5.5e-33 interpro_id=IPR008972 interpro_description=Cupredoxin)
Displaying 19 items

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