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ACD28_72

Alias: ACD28_38979.22483.12

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_72_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1..945
DNA (945bp) protein (315aa)
hypothetical protein
Putative DNA recombination protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVA7_9BACT (db=UNIREF evalue=5.0e-41 bit_score=171.0 identity=33.45 coverage=84.4444444444444)
seg (db=Seg db_id=seg from=232 to=243)
coiled-coil (db=Coil db_id=coil from=43 to=64 evalue=NA)
LINKS to end ACD28_83822 Jill Banfield (11/15/12)
ACD28_72_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1017..2642
DNA (1626bp) protein (542aa)
translation initiation factor IF-2
translation initiation factor IF-2
Translation initiation factor IF-2 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U5_CLOTS (db=UNIREF evalue=2.0e-124 bit_score=450.0 identity=48.39 coverage=94.8339483394834)
seg (db=Seg db_id=seg from=524 to=539)
ACD28_72_3
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

2639..3127
DNA (489bp) protein (163aa)
translation initiation factor IF-2
Translation initiation factor IF-2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2Z2_9BACT (db=UNIREF evalue=3.0e-15 bit_score=84.0 identity=41.36 coverage=98.7730061349693)
seg (db=Seg db_id=seg from=106 to=131)
seg (db=Seg db_id=seg from=46 to=68)
ACD28_72_4
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

3124..4101
DNA (978bp) protein (326aa)
rfbB1; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
rfbB1; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=2 Tax=Frankia RepID=Q2JCE7_FRASC (db=UNIREF evalue=3.0e-106 bit_score=388.0 identity=58.9 coverage=99.079754601227)
seg (db=Seg db_id=seg from=67 to=78)
ACD28_72_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4118..4297
DNA (180bp) protein (60aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4307..5101
DNA (795bp) protein (265aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF13 from=9 to=230 evalue=1.2e-95)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=9 to=230 evalue=1.2e-95)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=239 evalue=4.5e-68)
ACD28_72_7

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5091..6047
DNA (957bp) protein (319aa)
adenosine kinase (EC:2.7.1.20)
PfkB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUB7_9GAMM (db=UNIREF evalue=2.0e-61 bit_score=239.0 identity=41.51 coverage=97.4921630094044)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=305 evalue=1.5e-55)
PHOSPHOFRUCTOKINASE(PFKB) (db=HMMPanther db_id=PTHR10584:SF15 from=8 to=307 evalue=4.2e-53)
ACD28_72_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(6017..7051)
DNA (1035bp) protein (345aa)
polysaccharide pyruvyl transferase
PS_pyruv_trans (db=HMMPfam db_id=PF04230 from=14 to=304 evalue=2.7e-34 interpro_id=IPR007345 interpro_description=Polysaccharide pyruvyl transferase)
csaB; pyruvyl-transferase alias=ACD28_38979.22483.12G0008,ACD28_38979.22483.12_8,ACD28_C00072G00008 id=31593 tax=ACD28 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=PER organism_desc=PER
Polysaccharide pyruvyl transferase CsaB Tax=GWA2_PER_44_7
ACD28_72_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7053..7598)
DNA (546bp) protein (182aa)
Ribonuclease H (EC:3.1.26.4)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=181 evalue=3.1e-57 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RNase_HII (db=HMMPfam db_id=PF01351 from=1 to=176 evalue=1.7e-42 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
RIBONUCLEASE HII (db=HMMPanther db_id=PTHR10954 from=1 to=180 evalue=2.5e-41 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
ACD28_72_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists


comp(7618..8163)
DNA (546bp) protein (182aa)
50S ribosomal protein L19
seg (db=Seg db_id=seg from=133 to=167)
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=94 to=109 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=5 to=121 evalue=3.2e-36 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD28_72_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(8250..8816)
DNA (567bp) protein (189aa)
nucleotidyltransferase domain-containing protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH (db=UNIREF evalue=2.0e-25 bit_score=118.0 identity=37.36 coverage=93.1216931216931)
coiled-coil (db=Coil db_id=coil from=29 to=54 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=18 to=72 evalue=9.7e-06)
ACD28_72_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9140..9394)
DNA (255bp) protein (85aa)
seg (db=Seg db_id=seg from=74 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_13
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9413..10690)
DNA (1278bp) protein (426aa)
trigger factor
seg (db=Seg db_id=seg from=219 to=236)
seg (db=Seg db_id=seg from=125 to=138)
coiled-coil (db=Coil db_id=coil from=371 to=392 evalue=NA)
ACD28_72_14

Not on your lists

10820..13285
DNA (2466bp) protein (822aa)
coiled-coil (db=Coil db_id=coil from=347 to=368 evalue=NA)
seg (db=Seg db_id=seg from=99 to=113)
seg (db=Seg db_id=seg from=522 to=532)
Uncharacterized protein {ECO:0000313|EMBL:EKD93105.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_72_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

13294..13632
DNA (339bp) protein (113aa)
13294..13632 + (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_16
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

13728..15020
DNA (1293bp) protein (431aa)
seg (db=Seg db_id=seg from=365 to=379)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_17

Not on your lists

15047..15496
DNA (450bp) protein (150aa)
coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD93108.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_72_18
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

15518..16660
DNA (1143bp) protein (381aa)
seg (db=Seg db_id=seg from=347 to=362)
N-terminal domain of adenylylcyclase associated protein, CAP (db=superfamily db_id=SSF101278 from=274 to=356 evalue=6.3e-06 interpro_id=IPR013992 interpro_description=Adenylate cyclase-associated CAP, N-terminal GO=Molecular Function: actin binding (GO:0003779), Biological Process: cytoskeleton organization (GO:0007010))
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

16611..19556
DNA (2946bp) protein (982aa)
seg (db=Seg db_id=seg from=16 to=48)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_72_20

Not on your lists

19726..20103
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=52 to=68)
seg (db=Seg db_id=seg from=36 to=51)
seg (db=Seg db_id=seg from=3 to=16)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
ACD28_72_21
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

20383..21222
DNA (840bp) protein (280aa)
seg (db=Seg db_id=seg from=11 to=20)
Putative uncharacterized protein Tax=GWA2_PER_44_7
ACD28_72_22
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(21348..21827)
DNA (480bp) protein (160aa)
hypothetical protein
Thioredoxin-like (db=superfamily db_id=SSF52833 from=36 to=114 evalue=1.2e-08 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=6.0)
protein involved in disulfide bond formation alias=ACD28_38979.22483.12G0022,ACD28_38979.22483.12_22,ACD28_C00072G00022 id=31598 tax=ACD28 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=PER organism_desc=PER
ACD28_72_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(21838..22350)
DNA (513bp) protein (171aa)
seg (db=Seg db_id=seg from=77 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=89)
Displaying 23 items

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