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ACD28_109

Alias: ACD28_50912.8885.9

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_109_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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859..1539
DNA (681bp) protein (227aa)
cell surface protein
PKD domain (db=superfamily db_id=SSF49299 from=141 to=224 evalue=1.4e-21 interpro_id=IPR000601 interpro_description=PKD domain)
no description (db=HMMSmart db_id=SM00089 from=145 to=225 evalue=1.4e-14 interpro_id=IPR022409 interpro_description=PKD/Chitinase domain)
PKD domain (db=superfamily db_id=SSF49299 from=54 to=140 evalue=3.9e-14 interpro_id=IPR000601 interpro_description=PKD domain)
ACD28_109_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1653..3131
DNA (1479bp) protein (493aa)
1653..3131 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_109_3

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3187..4626
DNA (1440bp) protein (480aa)
coiled-coil (db=Coil db_id=coil from=456 to=477 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD92899.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_109_4
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4662..4874
DNA (213bp) protein (71aa)
4662..4874 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_109_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

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comp(4894..5424)
DNA (531bp) protein (177aa)
aspartate ammonia-lyase (EC:4.3.1.1)
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=18 to=27 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
ASPARTATE AMMONIA LYASE (db=HMMPanther db_id=PTHR11444:SF1 from=2 to=172 evalue=2.9e-66)
ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE (db=HMMPanther db_id=PTHR11444 from=2 to=172 evalue=2.9e-66)
ACD28_109_6

Not on your lists

5956..6177
DNA (222bp) protein (74aa)
seg (db=Seg db_id=seg from=52 to=64)
Uncharacterized protein {ECO:0000313|EMBL:EKD92893.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_109_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(6453..7046)
DNA (594bp) protein (198aa)
Ribosomal RNA large subunit methyltransferase E
23S ribosomal RNA methyltransferase (db=HMMPIR db_id=PIRSF005461 from=1 to=194 evalue=1.0e-69 interpro_id=IPR016448 interpro_description=23S ribosomal RNA methyltransferase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
RIBOSOMAL RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10920 from=7 to=194 evalue=2.3e-56 interpro_id=IPR015507 interpro_description=Ribosomal RNA methyltransferase J GO=Molecular Function: methyltransferase activity (GO:0008168), Biological Process: rRNA methylation (GO:0031167))
FtsJ (db=HMMPfam db_id=PF01728 from=20 to=192 evalue=4.2e-49 interpro_id=IPR002877 interpro_description=Ribosomal RNA methyltransferase RrmJ/FtsJ GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
ACD28_109_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7103..8002)
DNA (900bp) protein (300aa)
hypothetical protein
Conserved hypothetical membrane protein, DUF6 family n=1 Tax=uncultured archaeon RepID=D1JG52_9ARCH (db=UNIREF evalue=3.0e-13 bit_score=79.7 identity=23.15 coverage=96.3333333333333)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=167)
seg (db=Seg db_id=seg from=103 to=113)
ACD28_109_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7999..8544)
DNA (546bp) protein (182aa)
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86)
SUBFAMILY NOT NAMED (db=HMMPanther db_id=PTHR21371:SF1 from=1 to=176 evalue=1.2e-59)
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR21371 from=1 to=176 evalue=1.2e-59 interpro_id=IPR013023 interpro_description=Acetohydroxy acid isomeroreductase GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=33 to=167 evalue=2.0e-46 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
Displaying 9 items

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