Alias: ACD2_1414.46805.64
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_4_1
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
3..404
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LSU ribosomal protein L4P
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=4 to=132 evalue=1.6e-30 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=4 to=128 evalue=2.1e-30 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=4 to=132 evalue=3.6e-28 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
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ACD2_4_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
423..722
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seg (db=Seg db_id=seg from=67 to=78)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=94 evalue=1.8e-15 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=90 evalue=5.1e-15 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=96 evalue=8.0e-13 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
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ACD2_4_3
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
747..1595
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rplB; 50S ribosomal protein L2
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=4 to=277 evalue=3.5e-137 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=4 to=276 evalue=1.1e-100 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=95 to=278 evalue=1.3e-72 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_4
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
1674..1937
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30S ribosomal protein S19 n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA19_9FIRM (db=UNIREF evalue=1.0e-26 bit_score=121.0 identity=59.77 coverage=97.7272727272727)
30S ribosomal protein S19
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=87 evalue=1.6e-43 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=84 evalue=1.5e-38 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_5
unknown
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Not on your lists |
2014..2340
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LSU ribosomal protein L22P
50S ribosomal protein L22 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPK3_9DELT (db=UNIREF evalue=6.0e-09 bit_score=63.2 identity=44.23 coverage=94.4954128440367)
seg (db=Seg db_id=seg from=48 to=61)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=3 to=106 evalue=3.3e-24 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_6
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(2697..3074)
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seg (db=Seg db_id=seg from=37 to=55)
seg 37..55 Tax=ACD2
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ACD2_4_7
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
3113..3526
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50S ribosomal protein L16 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JYD5_9GAMM (db=UNIREF evalue=5.0e-40 bit_score=166.0 identity=61.24 coverage=92.7536231884058)
rplP; 50S ribosomal protein L16
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=5.9e-70 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein L16p/L10e (db=superfamily db_id=SSF54686 from=3 to=134 evalue=3.2e-51 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_8
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
3532..3726
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coiled-coil (db=Coil db_id=coil from=1 to=29 evalue=NA)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=8 to=62 evalue=5.2e-07 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
coiled-coil 1..29 Tax=ACD2
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ACD2_4_9
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
3750..3974
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30S ribosomal protein S17
seg (db=Seg db_id=seg from=23 to=39)
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=1 to=72 evalue=3.8e-35 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=71 evalue=4.6e-27 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_10
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
4001..4369
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50S ribosomal protein L14
seg (db=Seg db_id=seg from=53 to=63)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=3.1e-75 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=122 evalue=5.5e-64 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_11
unknown
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Not on your lists |
4407..4706
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50S ribosomal protein L24 n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B534_RUMGN (db=UNIREF evalue=7.0e-22 bit_score=106.0 identity=52.53 coverage=97.0)
rplX; 50S ribosomal protein L24
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=98 evalue=3.7e-37 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=98 evalue=1.1e-27 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_12
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
4734..5273
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50S ribosomal protein L5
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=4 to=179 evalue=4.7e-59 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=4 to=179 evalue=4.7e-59)
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=1 to=179 evalue=2.1e-51 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_13
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
5561..5956
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30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=101 to=118 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=131 evalue=2.2e-37 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=3 to=131 evalue=1.0e-35 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_4_14
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
5985..6539
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LSU ribosomal protein L6P
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=180 evalue=2.0e-78 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=183 evalue=3.4e-65)
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=183 evalue=3.4e-65 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD2_4_15
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
6584..6925
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rplR; 50S ribosomal protein L18
seg (db=Seg db_id=seg from=98 to=109)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=4 to=113 evalue=3.1e-37 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=21 to=113 evalue=8.9e-26)
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ACD2_4_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
6949..7632
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rpsE; 30S ribosomal protein S5
seg (db=Seg db_id=seg from=162 to=225)
seg (db=Seg db_id=seg from=106 to=117)
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=35 to=67 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
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ACD2_4_17
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
7663..8112
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50S ribosomal protein L15P
seg (db=Seg db_id=seg from=23 to=38)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=113 to=143 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=3 to=147 evalue=6.7e-47 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD2_4_18
unknown
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Not on your lists |
comp(8172..9374)
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two-component sensor histidine kinase
Sensor protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FVF9_9CLOT (db=UNIREF evalue=2.0e-17 bit_score=93.6 identity=29.46 coverage=52.6184538653367)
seg (db=Seg db_id=seg from=27 to=40)
seg (db=Seg db_id=seg from=277 to=288)
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ACD2_4_19
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(9361..10023)
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two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB (db=UNIREF evalue=6.0e-37 bit_score=157.0 identity=38.64 coverage=97.2850678733032)
two-component response regulator
CheY-like (db=superfamily db_id=SSF52172 from=1 to=187 evalue=4.6e-36 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=136 evalue=2.9e-32)
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ACD2_4_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(10089..10343)
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10089..10343 - (rbs_motif=TAA rbs_spacer=5bp)
hypothetical protein Tax=ACD2
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ACD2_4_21
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(10509..12323)
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Threonyl-tRNA synthetase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFJ5_RHOM4 (db=UNIREF evalue=5.0e-152 bit_score=541.0 identity=46.54 coverage=93.8842975206611)
Threonyl-tRNA synthetase
Threonyl-tRNA synthetase
Threonyl-tRNA synthetase
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ACD2_4_22
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(13049..13678)
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seg (db=Seg db_id=seg from=128 to=142)
seg 128..142 Tax=ACD2
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ACD2_4_23
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
13883..15574
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alternative thymidylate synthase-like
Thymidylate synthase-complementing protein Thy1 (db=superfamily db_id=SSF69796 from=399 to=546 evalue=7.7e-09 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
Thymidylate synthase-complementing protein Thy1 (db=superfamily db_id=SSF69796 from=108 to=301 evalue=3.0e-08 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
Thy1 (db=HMMPfam db_id=PF02511 from=109 to=290 evalue=1.3e-07 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
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ACD2_4_24
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(15693..16199)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
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ACD2_4_25
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(16237..17142)
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DSBA oxidoreductase
seg (db=Seg db_id=seg from=93 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
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ACD2_4_26
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
17209..17790
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sodB; superoxide dismutase (EC:1.15.1.1)
seg (db=Seg db_id=seg from=124 to=142)
SOD_MN (db=PatternScan db_id=PS00088 from=159 to=166 evalue=0.0 interpro_id=IPR019833 interpro_description=Manganese/iron superoxide dismutase, binding site GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=192 evalue=2.1e-92 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
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ACD2_4_27
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(17837..18325)
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seg (db=Seg db_id=seg from=113 to=125)
seg (db=Seg db_id=seg from=65 to=77)
seg 65..77 Tax=ACD2
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ACD2_4_28
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(18432..19778)
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seg (db=Seg db_id=seg from=346 to=362)
seg (db=Seg db_id=seg from=274 to=290)
seg (db=Seg db_id=seg from=86 to=100)
seg (db=Seg db_id=seg from=2 to=23)
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ACD2_4_29
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(21552..21929)
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21552..21929 - (rbs_motif=TAAAAA rbs_spacer=5bp)
hypothetical protein Tax=ACD2
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ACD2_4_30
unknown
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Not on your lists |
comp(21946..22722)
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Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V3E3_9AQUI (db=UNIREF evalue=2.0e-38 bit_score=162.0 identity=38.02 coverage=92.2779922779923)
hypothetical protein
YebC-like (db=superfamily db_id=SSF75625 from=2 to=246 evalue=4.5e-57 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
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