Alias: ACD2_1051.112881.59
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_8_1
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(2..145)
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seg (db=Seg db_id=seg from=20 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Pili subunits (db=superfamily db_id=SSF54523 from=20 to=46 evalue=1.1e-10)
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ACD2_8_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(168..2597)
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seg (db=Seg db_id=seg from=777 to=792)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=10 to=33)
seg (db=Seg db_id=seg from=390 to=403)
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ACD2_8_3
unknown
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Not on your lists |
comp(2671..3276)
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probable transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25B3 (db=UNIREF evalue=1.0e-12 bit_score=76.3 identity=30.69 coverage=89.6039603960396)
coiled-coil (db=Coil db_id=coil from=38 to=59 evalue=NA)
probable transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25B3 Tax=ACD2
nucleotidyltransferase domain-containing protein
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ACD2_8_4
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
3536..4561
|
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
seg (db=Seg db_id=seg from=3 to=18)
seg (db=Seg db_id=seg from=287 to=305)
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ACD2_8_5
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
4679..5362
|
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=227 evalue=1.5e-103 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=1.5e-85 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
RIBOSOMAL PROTEIN L7AE FAMILY MEMBER (db=HMMPanther db_id=PTHR23105 from=21 to=225 evalue=4.4e-76)
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ACD2_8_6
unknown
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Not on your lists |
comp(5795..6250)
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NUDIX hydrolase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT77_9BACT (db=UNIREF evalue=1.0e-13 bit_score=79.0 identity=34.88 coverage=83.5526315789474)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=138 evalue=1.1e-10)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=139 evalue=1.4e-05)
NUDIX hydrolase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT77_9BACT Tax=ACD2
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ACD2_8_7
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(6314..6625)
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seg (db=Seg db_id=seg from=65 to=76)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=21 to=102 evalue=6.5e-10)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=24 to=79 evalue=0.00017)
seg 65..76 Tax=ACD2
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ACD2_8_8
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(6683..7195)
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seg (db=Seg db_id=seg from=68 to=90)
seg 68..90 Tax=ACD2
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ACD2_8_9
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(7224..9521)
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seg (db=Seg db_id=seg from=475 to=488)
seg (db=Seg db_id=seg from=5 to=19)
seg (db=Seg db_id=seg from=376 to=388)
PKD domain (db=superfamily db_id=SSF49299 from=356 to=435 evalue=6.0e-12 interpro_id=IPR000601 interpro_description=PKD domain)
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ACD2_8_10
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
9737..10654
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ATPase, MoxR family n=1 Tax=Prevotella oris F0302 RepID=D1QMH6_9BACT (db=UNIREF evalue=1.0e-93 bit_score=346.0 identity=54.51 coverage=93.4640522875817)
ATPase AAA
ATPase AAA
ATPase AAA
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ACD2_8_11
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
10656..11519
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von Willebrand factor type A
von Willebrand factor type A n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EPA5_CHLPB (db=UNIREF evalue=3.0e-23 bit_score=112.0 identity=27.11 coverage=97.5694444444444)
seg (db=Seg db_id=seg from=162 to=179)
seg (db=Seg db_id=seg from=224 to=239)
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ACD2_8_12
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11527..11724
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11527..11724 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
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ACD2_8_13
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11724..12179
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=20 to=34)
transmembrane_regions 20..42 Tax=ACD2
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ACD2_8_14
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
12183..13568
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hypothetical protein
MiaB-like tRNA modifying enzyme YliG n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3P9L5_DEFDS (db=UNIREF evalue=1.0e-56 bit_score=224.0 identity=33.56 coverage=86.5800865800866)
seg (db=Seg db_id=seg from=244 to=254)
RADICAL SAM PROTEINS (db=HMMPanther db_id=PTHR11918 from=3 to=426 evalue=4.3e-46 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
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ACD2_8_15
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(13563..13952)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=24 to=35)
transmembrane_regions 5..24 Tax=ACD2
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ACD2_8_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(13960..14310)
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Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=4 to=114 evalue=4.3e-06 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
Anti-sigma factor antagonist SpoIIaa Tax=ACD2
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ACD2_8_17
unknown
|
Not on your lists |
comp(14315..14785)
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DNA-binding response regulator n=2 Tax=Actinomyces odontolyticus RepID=D4TX14_9ACTO (db=UNIREF evalue=3.0e-13 bit_score=77.4 identity=30.07 coverage=88.5350318471338)
bceR; two component transcriptional regulator
CheY-like (db=superfamily db_id=SSF52172 from=1 to=122 evalue=1.1e-24 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=5 to=106 evalue=2.6e-20)
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ACD2_8_18
unknown
|
Not on your lists |
comp(14807..16861)
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Sensor protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BJ30_9PROT (db=UNIREF evalue=5.0e-53 bit_score=213.0 identity=29.6 coverage=69.9270072992701)
PAS/PAC sensor signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=295 to=326 evalue=NA)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=24 to=683 evalue=1.9e-51)
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ACD2_8_19
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
17025..17822
|
seg (db=Seg db_id=seg from=179 to=188)
seg (db=Seg db_id=seg from=197 to=211)
seg 179..188 Tax=ACD2
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ACD2_8_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
19949..20701
|
hypothetical protein (db=KEGG evalue=6.0e-08 bit_score=61.2 identity=26.21 coverage=92.4302788844621)
hypothetical protein alias=ACD2_1051.112881.59G0020,ACD2_1051.112881.59_20,ACD2_C00008G00020 id=34191 tax=ACD2 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD2
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ACD2_8_21
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
20857..22014
|
hypothetical protein
PLP-binding barrel (db=superfamily db_id=SSF51419 from=26 to=259 evalue=1.2e-36)
no description (db=Gene3D db_id=G3DSA:3.20.20.10 from=24 to=236 evalue=7.4e-32)
alr: alanine racemase (db=HMMTigr db_id=TIGR00492 from=22 to=385 evalue=2.0e-30 interpro_id=IPR000821 interpro_description=Alanine racemase GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
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L- to D-alanine, one step before start peptidoglycan
Jill Banfield
(11/15/12)
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ACD2_8_22
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
22099..22806
|
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor (db=KEGG evalue=3.0e-20 bit_score=101.0 identity=44.23 coverage=39.8305084745763)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=88 evalue=1.2e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=90 evalue=2.0e-18)
HrcA (db=HMMPfam db_id=PF01628 from=143 to=223 evalue=0.00013 interpro_id=IPR021153 interpro_description=Winged helix-turn-helix transcription repressor, HrcA, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD2_8_23
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(22809..23318)
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seg (db=Seg db_id=seg from=161 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions 17..39 Tax=ACD2
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ACD2_8_24
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
23400..25280
|
GTP-binding protein lepA n=2 Tax=Bacillales RepID=D3E4Y9_GEOS4 (db=UNIREF evalue=1.0e-171 bit_score=607.0 identity=46.58 coverage=94.4178628389155)
GTP-binding protein LepA
GTP-binding protein LepA
GTP-binding protein LepA
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ACD2_8_25
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
25384..27210
|
Glucosamine--fructose-6-phosphate aminotransferase n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3P9K8_DEFDS (db=UNIREF evalue=8.0e-128 bit_score=461.0 identity=40.1 coverage=99.0147783251232)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
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ACD2_8_26
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(27265..29316)
|
ftsH_5; ATP-dependent Zn protease
seg (db=Seg db_id=seg from=530 to=538)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=329 to=603 evalue=2.0e-45)
26S PROTEASE REGULATORY SUBUNIT (db=HMMPanther db_id=PTHR23073 from=312 to=608 evalue=1.7e-37)
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ACD2_8_27
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(29556..31895)
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seg (db=Seg db_id=seg from=6 to=20)
seg (db=Seg db_id=seg from=60 to=72)
seg (db=Seg db_id=seg from=277 to=285)
seg (db=Seg db_id=seg from=315 to=326)
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ACD2_8_28
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(32597..32851)
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seg (db=Seg db_id=seg from=14 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD2
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ACD2_8_29
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
33054..33863
|
Trypsin
SERINE PROTEASE DO/HTRA-RELATED (db=HMMPanther db_id=PTHR22939:SF10 from=18 to=255 evalue=3.1e-28)
SERINE PROTEASE FAMILY S1C HTRA-RELATED (db=HMMPanther db_id=PTHR22939 from=18 to=255 evalue=3.1e-28)
Trypsin-like serine proteases (db=superfamily db_id=SSF50494 from=1 to=264 evalue=1.5e-26 interpro_id=IPR009003 interpro_description=Serine/cysteine peptidase, trypsin-like GO=Molecular Function: catalytic activity (GO:0003824))
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ACD2_8_30
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(33966..34202)
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seg (db=Seg db_id=seg from=54 to=66)
seg 54..66 Tax=ACD2
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