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ACD2_21

Alias: ACD2_2133.124783.59

Search features with annotation key words

Displaying items 31-60 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_21_31
ACD2, Gracilibacteria, Bacteria

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comp(31928..32143)
DNA (216bp) protein (72aa)
rpsR; 30S ribosomal protein S18
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=1 to=69 evalue=2.4e-25 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479 from=4 to=71 evalue=1.3e-21 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=4 to=71 evalue=1.3e-21)
ACD2_21_32

Not on your lists

comp(32173..32580)
DNA (408bp) protein (136aa)
single-strand binding protein
seg (db=Seg db_id=seg from=112 to=133)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=135 evalue=9.1e-36 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=107 evalue=6.3e-32 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
ACD2_21_33
unknown

Not on your lists


comp(32605..32853)
DNA (249bp) protein (83aa)
30S ribosomal protein S6 n=3 Tax=Fusobacterium RepID=C3WLF0_9FUSO (db=UNIREF evalue=3.0e-08 bit_score=60.5 identity=38.46 coverage=92.7710843373494)
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=1 to=79 evalue=4.5e-16 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=1 to=82 evalue=3.1e-13 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
no description (db=Gene3D db_id=G3DSA:3.30.70.60 from=1 to=82 evalue=4.2e-11 interpro_id=IPR014717 interpro_description=Translation elongation factor EF1B/ribosomal protein S6)
ACD2_21_34
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(33063..36461)
DNA (3399bp) protein (1133aa)
glycosyl hydrolase protein (db=KEGG evalue=1.0e-10 bit_score=73.2 identity=28.44 coverage=17.9170344218888)
seg (db=Seg db_id=seg from=604 to=626)
seg (db=Seg db_id=seg from=22 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD2_21_35
unknown

Not on your lists

36682..37959
DNA (1278bp) protein (426aa)
Type II secretion system protein E n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE56_9FIRM (db=UNIREF evalue=1.0e-82 bit_score=310.0 identity=38.6 coverage=88.9671361502347)
type II secretion system protein E (GspE)
seg (db=Seg db_id=seg from=292 to=303)
ACD2_21_36
ACD2, Gracilibacteria, Bacteria

Not on your lists

38059..38349
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=56 to=66)
seg 56..66 Tax=ACD2
ACD2_21_37
ACD2, Gracilibacteria, Bacteria

Not on your lists

38377..38730
DNA (354bp) protein (118aa)
38377..38730 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD2
ACD2_21_38
ACD2, Gracilibacteria, Bacteria

Not on your lists

38693..38872
DNA (180bp) protein (60aa)
38693..38872 + (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
ACD2_21_39
ACD2, Gracilibacteria, Bacteria

Not on your lists


comp(38829..39005)
DNA (177bp) protein (59aa)
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=12 to=52 evalue=8.6e-10 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=2 to=57 evalue=1.1e-07 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=57 evalue=1.6e-05 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L33 12..52 Tax=ACD2
ACD2_21_40
ACD2, Gracilibacteria, Bacteria

Not on your lists

39192..40547
DNA (1356bp) protein (452aa)
obg; GTPase obg
coiled-coil (db=Coil db_id=coil from=247 to=275 evalue=NA)
Obg_CgtA: Obg family GTPase CgtA (db=HMMTigr db_id=TIGR02729 from=2 to=328 evalue=9.9e-110 interpro_id=IPR014100 interpro_description=GTP-binding protein Obg/CgtA)
GTP-binding protein, obg type (db=HMMPIR db_id=PIRSF002401 from=1 to=380 evalue=5.2e-99 interpro_id=IPR014100 interpro_description=GTP-binding protein Obg/CgtA)
ACD2_21_41
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(40594..41130)
DNA (537bp) protein (179aa)
40594..41130 - (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD2
ACD2_21_42

Not on your lists

comp(41234..41506)
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=1 to=89 evalue=2.4e-30 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=1.3e-29 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
ACD2_21_43
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(42254..43036)
DNA (783bp) protein (261aa)
TrmB (db=HMMPfam db_id=PF01978 from=7 to=63 evalue=5.9e-05 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
TrmB Tax=ACD2
ACD2_21_44
ACD2, Gracilibacteria, Bacteria

Not on your lists

43348..44928
DNA (1581bp) protein (527aa)
seg (db=Seg db_id=seg from=255 to=266)
seg 255..266 Tax=ACD2
ACD2_21_45
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(47086..48129)
DNA (1044bp) protein (348aa)
seg (db=Seg db_id=seg from=292 to=306)
seg 292..306 Tax=ACD2
ACD2_21_46
ACD2, Gracilibacteria, Bacteria

Not on your lists

48712..49572
DNA (861bp) protein (287aa)
48712..49572 + (rbs_motif=TAAAAA rbs_spacer=7bp)
hypothetical protein Tax=ACD2
ACD2_21_47
ACD2, Gracilibacteria, Bacteria

Not on your lists

49602..51287
DNA (1686bp) protein (562aa)
seg (db=Seg db_id=seg from=545 to=558)
seg (db=Seg db_id=seg from=51 to=67)
seg 51..67 Tax=ACD2
ACD2_21_48
ACD2, Gracilibacteria, Bacteria

Not on your lists

51351..53084
DNA (1734bp) protein (578aa)
seg (db=Seg db_id=seg from=563 to=575)
seg 563..575 Tax=ACD2
hypothetical protein
ACD2_21_49
ACD2, Gracilibacteria, Bacteria

Not on your lists

53153..54838
DNA (1686bp) protein (562aa)
seg (db=Seg db_id=seg from=50 to=62)
seg (db=Seg db_id=seg from=237 to=250)
Insect cysteine-rich antifreeze protein (db=superfamily db_id=SSF51156 from=300 to=381 evalue=3.1e-05 interpro_id=IPR016133 interpro_description=Insect antifreeze protein)
seg 50..62 Tax=ACD2
ACD2_21_50
unknown

Not on your lists

54936..56534
DNA (1599bp) protein (533aa)
Caib/baif family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08VI8_STIAU (db=UNIREF evalue=1.0e-07 bit_score=62.0 identity=29.9 coverage=17.4484052532833)
Caib/baif family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08VI8_STIAU Tax=ACD2
ACD2_21_51
ACD2, Gracilibacteria, Bacteria

Not on your lists

56545..58323
DNA (1779bp) protein (593aa)
hypothetical protein
seg (db=Seg db_id=seg from=42 to=53)
seg (db=Seg db_id=seg from=447 to=457)
hypothetical protein alias=ACD2_C00021G00051,ACD2_2133.124783.59_51,ACD2_2133.124783.59G0051 id=34741 tax=ACD2 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD2_21_52
unknown

Not on your lists

comp(58328..59080)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHZ5_9BACT (db=UNIREF evalue=1.0e-08 bit_score=63.5 identity=24.84 coverage=63.3466135458167)
seg (db=Seg db_id=seg from=209 to=225)
TrmB (db=HMMPfam db_id=PF01978 from=11 to=64 evalue=5.3e-06 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHZ5_9BACT Tax=ACD2
ACD2_21_53
ACD2, Gracilibacteria, Bacteria

Not on your lists

59229..60974
DNA (1746bp) protein (582aa)
coiled-coil (db=Coil db_id=coil from=244 to=265 evalue=NA)
seg (db=Seg db_id=seg from=202 to=213)
coiled-coil 244..265 Tax=ACD2
ACD2_21_54
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(60979..61551)
DNA (573bp) protein (191aa)
seg (db=Seg db_id=seg from=107 to=121)
seg (db=Seg db_id=seg from=33 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=131)
ACD2_21_55
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(61544..61924)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=107)
transmembrane_regions 5..27 Tax=ACD2
ACD2_21_56
ACD2, Gracilibacteria, Bacteria

Not on your lists

62048..63256
DNA (1209bp) protein (403aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=280 to=312)
transmembrane_regions (db=TMHMM db_id=tmhmm from=332 to=354)
transmembrane_regions (db=TMHMM db_id=tmhmm from=359 to=381)
seg (db=Seg db_id=seg from=146 to=158)
ACD2_21_57
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(63253..64017)
DNA (765bp) protein (255aa)
coiled-coil (db=Coil db_id=coil from=81 to=102 evalue=NA)
coiled-coil 81..102 Tax=ACD2
ACD2_21_58

Not on your lists

64153..65886
DNA (1734bp) protein (578aa)
seg (db=Seg db_id=seg from=144 to=154)
seg (db=Seg db_id=seg from=249 to=266)
seg (db=Seg db_id=seg from=522 to=533)
Uncharacterized protein {ECO:0000313|EMBL:EKE29827.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD2_21_59
ACD2, Gracilibacteria, Bacteria

Not on your lists

65918..67603
DNA (1686bp) protein (562aa)
seg (db=Seg db_id=seg from=462 to=475)
seg 462..475 Tax=ACD2
ACD2_21_60
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(67607..68944)
DNA (1338bp) protein (446aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=356 to=373)
transmembrane_regions (db=TMHMM db_id=tmhmm from=388 to=410)
transmembrane_regions (db=TMHMM db_id=tmhmm from=422 to=444)
Displaying items 31-60 of 108 in total

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