ggKbase home page

ACD12_86

Alias: ACD12_27118.43669.14

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_86_1

Not on your lists

1..993
DNA (993bp) protein (331aa)
NAD dependent epimerase/dehydratase family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W1K8_9CYAN (db=UNIREF evalue=2.0e-68 bit_score=263.0 identity=45.08 coverage=93.9577039274924)
hypothetical protein
seg (db=Seg db_id=seg from=79 to=91)
CDP-GLUCOSE-4,6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF33 from=25 to=330 evalue=4.0e-87 interpro_id=IPR013445 interpro_description=CDP-glucose 4,6-dehydratase)
ACD12_86_2

Not on your lists

1060..1455
DNA (396bp) protein (132aa)
HEPN domain-containing protein
HEPN domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W3H5_DYAFD (db=UNIREF evalue=3.0e-19 bit_score=97.4 identity=40.48 coverage=94.6969696969697)
HEPN (db=HMMPfam db_id=PF05168 from=11 to=124 evalue=6.8e-20 interpro_id=IPR007842 interpro_description=HEPN)
Nucleotidyltransferase substrate binding subunit/domain (db=superfamily db_id=SSF81593 from=11 to=131 evalue=2.9e-14)
ACD12_86_3

Not on your lists

1452..1793
DNA (342bp) protein (114aa)
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYL3_DESAS (db=UNIREF evalue=4.0e-09 bit_score=63.9 identity=40.23 coverage=70.1754385964912)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=1 to=113 evalue=4.0e-14)
NTP_transf_2 (db=HMMPfam db_id=PF01909 from=25 to=70 evalue=1.7e-09 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
ACD12_86_4

Not on your lists

comp(1979..3184)
DNA (1206bp) protein (402aa)
hypothetical protein
seg (db=Seg db_id=seg from=329 to=341)
seg (db=Seg db_id=seg from=277 to=286)
seg (db=Seg db_id=seg from=147 to=160)
ACD12_86_5

Not on your lists

3330..3851
DNA (522bp) protein (174aa)
apt; adenine phosphoribosyltransferase
seg (db=Seg db_id=seg from=116 to=131)
apt: adenine phosphoribosyltransferase (db=HMMTigr db_id=TIGR01090 from=3 to=170 evalue=6.1e-79 interpro_id=IPR005764 interpro_description=Adenine phosphoribosyl transferase GO=Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999), Cellular Component: cytoplasm (GO:0005737), Biological Process: adenine salvage (GO:0006168))
no description (db=Gene3D db_id=G3DSA:3.40.50.2020 from=3 to=167 evalue=6.9e-55)
ACD12_86_6

Not on your lists

4621..6408
DNA (1788bp) protein (596aa)
thiamine pyrophosphate central domain-containing protein
thiamine pyrophosphate central domain-containing protein
Acetolactate synthase, large subunit n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC71_SULNB (db=UNIREF evalue=9.0e-143 bit_score=511.0 identity=46.81 coverage=98.8255033557047)
seg (db=Seg db_id=seg from=379 to=395)
ACD12_86_7

Not on your lists

6410..7297
DNA (888bp) protein (296aa)
sugar epimerase/dehydratase
seg (db=Seg db_id=seg from=44 to=55)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=270 evalue=3.0e-29)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=273 evalue=5.1e-19)
ACD12_86_8

Not on your lists

7294..8283
DNA (990bp) protein (330aa)
Polysaccharide biosynthesis protein CapD n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NHE9_ROSCS (db=UNIREF evalue=4.0e-117 bit_score=424.0 identity=63.44 coverage=95.4545454545455)
polysaccharide biosynthesis protein CapD
polysaccharide biosynthesis protein CapD
PseB: UDP-N-acetylglucosamine 4,6-dehydratas (db=HMMTigr db_id=TIGR03589 from=7 to=328 evalue=1.9e-206 interpro_id=IPR020025 interpro_description=Pseudaminic acid biosynthesis, PseB)
ACD12_86_9

Not on your lists

8293..9165
DNA (873bp) protein (291aa)
dTDP-4-dehydrorhamnose reductase
seg (db=Seg db_id=seg from=231 to=255)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=290 evalue=3.4e-45)
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=3 to=288 evalue=3.7e-38 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD12_86_10

Not on your lists

9172..10239
DNA (1068bp) protein (356aa)
N-acylneuraminate-9-phosphate synthase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5B5_9DELT (db=UNIREF evalue=8.0e-130 bit_score=467.0 identity=62.15 coverage=99.1573033707865)
N-acetylneuraminate synthase (EC:2.5.1.56)
N-acetylneuraminate synthase (EC:2.5.1.56)
SIALIC ACID SYNTHASE-RELATED (db=HMMPanther db_id=PTHR23416 from=11 to=355 evalue=2.3e-82)
ACD12_86_11

Not on your lists

comp(10232..10870)
DNA (639bp) protein (213aa)
Glycosyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BI18_9GAMM (db=UNIREF evalue=5.0e-33 bit_score=144.0 identity=36.49 coverage=97.6525821596244)
glycosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=192 evalue=6.8e-34)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=9 to=188 evalue=6.6e-29)
ACD12_86_12

Not on your lists

10915..12102
DNA (1188bp) protein (396aa)
methyltransferase family protein
coiled-coil (db=Coil db_id=coil from=170 to=191 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=55 to=255 evalue=2.0e-31)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=101 to=287 evalue=4.1e-18)
ACD12_86_13

Not on your lists

12667..13329
DNA (663bp) protein (221aa)
hypothetical protein
seg (db=Seg db_id=seg from=112 to=122)
coiled-coil (db=Coil db_id=coil from=112 to=133 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=73 evalue=6.0e-07)
ACD12_86_14

Not on your lists

13326..14258
DNA (933bp) protein (311aa)
glycosyl transferase
Putative family 2 glycosyltransferase n=1 Tax=Paenibacillus alvei RepID=D6QW71_PAEAL (db=UNIREF evalue=2.0e-65 bit_score=252.0 identity=43.51 coverage=98.3922829581994)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=287)
seg (db=Seg db_id=seg from=234 to=247)
ACD12_86_15

Not on your lists

comp(14267..14770)
DNA (504bp) protein (168aa)
Acetolactate synthase large subunit (EC:2.2.1.6)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=1 to=150 evalue=1.7e-34)
TPP_enzyme_C (db=HMMPfam db_id=PF02775 from=5 to=122 evalue=1.1e-28 interpro_id=IPR011766 interpro_description=Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: thiamin pyrophosphate binding (GO:0030976))
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=6 to=126 evalue=1.5e-28)
ACD12_86_16

Not on your lists

comp(16075..17130)
DNA (1056bp) protein (352aa)
4-hydroxy-2-oxopentanoic acid aldolase
4-hydroxy-2-oxopentanoic acid aldolase
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Spirochaeta aurantia RepID=HOA_SPIAU (db=UNIREF evalue=3.0e-86 bit_score=322.0 identity=49.85 coverage=95.1704545454545)
seg (db=Seg db_id=seg from=71 to=83)
ACD12_86_17

Not on your lists

comp(17127..18026)
DNA (900bp) protein (300aa)
acetaldehyde dehydrogenase
acetaldehyde dehydrogenase
Acetaldehyde dehydrogenase n=1 Tax=Pectobacterium atrosepticum RepID=ACDH_ERWCT (db=UNIREF evalue=3.0e-80 bit_score=302.0 identity=54.96 coverage=93.0)
seg (db=Seg db_id=seg from=224 to=239)
ACD12_86_18

Not on your lists

18094..18954
DNA (861bp) protein (287aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5G4_9BACT (db=UNIREF evalue=7.0e-15 bit_score=84.7 identity=32.45 coverage=59.9303135888502)
Aldolase (db=superfamily db_id=SSF51569 from=10 to=251 evalue=2.2e-29)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=13 to=251 evalue=8.2e-25 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Lysine biosynthesis (lacks the reductase: 1.3.1.26) Jill Banfield (11/15/12)
ACD12_86_19

Not on your lists

comp(18982..19365)
DNA (384bp) protein (128aa)
seg (db=Seg db_id=seg from=95 to=110)
Uncharacterized protein {ECO:0000313|EMBL:EKE14747.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_86_20

Not on your lists

comp(19358..19597)
DNA (240bp) protein (80aa)
19358..19597 - (rbs_motif=TATTA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14748.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_86_21

Not on your lists

comp(19694..20707)
DNA (1014bp) protein (338aa)
wcaA; glycosyltransferase, WcaA (EC:2.-.-.-)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
seg (db=Seg db_id=seg from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=290 to=312)
ACD12_86_22

Not on your lists

comp(20649..21584)
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BA7_SOLUE (db=UNIREF evalue=2.0e-91 bit_score=339.0 identity=56.71 coverage=95.1923076923077)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
ACD12_86_23

Not on your lists

comp(21586..22083)
DNA (498bp) protein (166aa)
transketolase
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=3 to=165 evalue=6.5e-30)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=3 to=165 evalue=6.5e-19)
1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR11624:SF20 from=39 to=165 evalue=9.0e-18)
ACD12_86_24

Not on your lists

comp(22080..22796)
DNA (717bp) protein (239aa)
transketolase (EC:2.2.1.1)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=4 to=207 evalue=2.5e-41)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=4 to=207 evalue=5.5e-41)
TRANSKETOLASE (db=HMMPanther db_id=PTHR11624:SF2 from=30 to=207 evalue=3.1e-38)
ACD12_86_25

Not on your lists

comp(22793..23695)
DNA (903bp) protein (301aa)
type 11 methyltransferase
seg (db=Seg db_id=seg from=70 to=81)
seg (db=Seg db_id=seg from=284 to=295)
seg (db=Seg db_id=seg from=265 to=276)
ACD12_86_26

Not on your lists

comp(23679..24629)
DNA (951bp) protein (317aa)
nucleoside-diphosphate-sugar epimerase
NAD-dependent epimerase/dehydratase n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GDY5_METPE (db=UNIREF evalue=5.0e-67 bit_score=258.0 identity=41.29 coverage=97.1608832807571)
seg (db=Seg db_id=seg from=18 to=28)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=7 to=313 evalue=8.9e-76)
ACD12_86_27

Not on your lists

24680..24769
DNA (90bp) protein (30aa)
24680..24769 + (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14755.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_86_28

Not on your lists

comp(24756..26000)
DNA (1245bp) protein (415aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHW2_THEYD (db=UNIREF evalue=5.0e-115 bit_score=418.0 identity=50.49 coverage=98.0722891566265)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=7 to=223 evalue=1.3e-18)
ACD12_86_29

Not on your lists

26023..28779
DNA (2757bp) protein (919aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein
seg (db=Seg db_id=seg from=801 to=812)
seg (db=Seg db_id=seg from=47 to=57)
DegT_DnrJ_EryC1 (db=HMMPfam db_id=PF01041 from=46 to=228 evalue=2.1e-60 interpro_id=IPR000653 interpro_description=DegT/DnrJ/EryC1/StrS aminotransferase)
ACD12_86_30

Not on your lists

28802..29740
DNA (939bp) protein (313aa)
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EZ4_THICR (db=UNIREF evalue=2.0e-51 bit_score=206.0 identity=37.99 coverage=96.1661341853035)
seg (db=Seg db_id=seg from=242 to=259)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=306 evalue=8.0e-56)
Displaying items 1-30 of 41 in total

View Taxonomy