ggKbase home page

ACD3_15

Alias: ACD3_1803.19723.84

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_15_1

Not on your lists

824..2311
DNA (1488bp) protein (496aa)
metal dependent phosphohydrolase
metal dependent phosphohydrolase
metal dependent phosphohydrolase n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B207A (db=UNIREF evalue=1.0e-86 bit_score=323.0 identity=40.64 coverage=99.1935483870968)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
ACD3_15_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

2371..3147
DNA (777bp) protein (259aa)
seg (db=Seg db_id=seg from=39 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=245)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=219)
transmembrane_regions (db=TMHMM db_id=tmhmm from=166 to=188)
ACD3_15_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

3102..4637
DNA (1536bp) protein (512aa)
ComEC/Rec2-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=411 to=433)
transmembrane_regions (db=TMHMM db_id=tmhmm from=438 to=460)
transmembrane_regions (db=TMHMM db_id=tmhmm from=475 to=494)
ACD3_15_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(4594..5313)
DNA (720bp) protein (240aa)
seg (db=Seg db_id=seg from=154 to=174)
seg (db=Seg db_id=seg from=13 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=208)
coiled-coil (db=Coil db_id=coil from=16 to=44 evalue=NA)
ACD3_15_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(5319..6599)
DNA (1281bp) protein (427aa)
Serine hydroxymethyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLQ3_FIBSS (db=UNIREF evalue=1.0e-137 bit_score=493.0 identity=55.19 coverage=95.7845433255269)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
SERINE HYDROXYMETHYLTRANSFERASE (db=HMMPanther db_id=PTHR11680 from=20 to=418 evalue=7.1e-175 interpro_id=IPR001085 interpro_description=Serine hydroxymethyltransferase GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563))
Glycine - Serine Jill Banfield (11/15/12)
ACD3_15_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(6565..7908)
DNA (1344bp) protein (448aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
coiled-coil (db=Coil db_id=coil from=390 to=411 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=27)
prc: C-terminal processing peptidase (db=HMMTigr db_id=TIGR00225 from=75 to=405 evalue=7.4e-69 interpro_id=IPR004447 interpro_description=Peptidase S41A, C-terminal peptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
ACD3_15_7

Not on your lists

8204..8518
DNA (315bp) protein (105aa)
coiled-coil (db=Coil db_id=coil from=63 to=84 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE28146.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_15_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

8520..8720
DNA (201bp) protein (67aa)
8520..8720 + (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD3
ACD3_15_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

8810..10174
DNA (1365bp) protein (455aa)
coiled-coil (db=Coil db_id=coil from=120 to=148 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=382 to=404)
transmembrane_regions (db=TMHMM db_id=tmhmm from=409 to=426)
transmembrane_regions (db=TMHMM db_id=tmhmm from=433 to=452)
ACD3_15_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

10178..11374
DNA (1197bp) protein (399aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=292 to=314)
transmembrane_regions (db=TMHMM db_id=tmhmm from=318 to=340)
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=369)
transmembrane_regions (db=TMHMM db_id=tmhmm from=374 to=393)
ACD3_15_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

11376..12005
DNA (630bp) protein (210aa)
phosphoribosyltransferase
PRTase-like (db=superfamily db_id=SSF53271 from=35 to=206 evalue=4.0e-08)
phosphoribosyltransferase alias=ACD3_1803.19723.84G0011,ACD3_1803.19723.84_11,ACD3_C00015G00011 id=49773 tax=ACD3 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
phosphoribosyltransferase Tax=ACD3
ACD3_15_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

12027..14870
DNA (2844bp) protein (948aa)
Excinuclease ABC subunit A n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A8E2_PELCD (db=UNIREF evalue=0.0 bit_score=879.0 identity=46.64 coverage=98.6286919831224)
uvrA; putative excinuclease ABC subunit A
uvrA; putative excinuclease ABC subunit A
uvra: excinuclease ABC subunit A (db=HMMTigr db_id=TIGR00630 from=4 to=927 evalue=0.0 interpro_id=IPR004602 interpro_description=Excinuclease ABC, A subunit GO=Biological Process: nucleotide-excision repair (GO:0006289), Cellular Component: excinuclease repair complex (GO:0009380), Molecular Function: excinuclease ABC activity (GO:0009381))
ACD3_15_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

14874..15365
DNA (492bp) protein (164aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
seg (db=Seg db_id=seg from=24 to=39)
transmembrane_regions 23..45 Tax=ACD3
ACD3_15_14
unknown

Not on your lists

15483..16463
DNA (981bp) protein (327aa)
Phosphoesterase domain-containing protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB1_9FIRM (db=UNIREF evalue=9.0e-31 bit_score=137.0 identity=32.48 coverage=91.743119266055)
phosphoesterase RecJ domain-containing protein
seg (db=Seg db_id=seg from=205 to=216)
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=15 to=302 evalue=1.8e-39)
ACD3_15_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

16463..17182
DNA (720bp) protein (240aa)
pseudouridine synthase
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=11 to=233 evalue=9.9e-53)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=11 to=233 evalue=9.9e-53)
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=72 to=225 evalue=2.7e-32 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
ACD3_15_16

Not on your lists

17360..18517
DNA (1158bp) protein (386aa)
S-layer domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6B1_PAESJ (db=UNIREF evalue=1.0e-14 bit_score=84.7 identity=33.33 coverage=40.4145077720207)
Ig-like domain-containing protein,putative S-layer protein
SLH (db=HMMPfam db_id=PF00395 from=270 to=312 evalue=1.8e-10 interpro_id=IPR001119 interpro_description=S-layer homology domain)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=56 to=148 evalue=3.9e-10 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
ACD3_15_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

18619..19683
DNA (1065bp) protein (355aa)
glycosyl transferase group 1 (db=KEGG evalue=2.0e-22 bit_score=109.0 identity=26.09 coverage=82.8169014084507)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=17 to=354 evalue=4.2e-50)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=3 to=354 evalue=6.8e-34)
Glycos_transf_1 (db=HMMPfam db_id=PF00534 from=177 to=332 evalue=7.1e-24 interpro_id=IPR001296 interpro_description=Glycosyl transferase, group 1 GO=Biological Process: biosynthetic process (GO:0009058))
Displaying 17 items

View Taxonomy