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ACD3_29

Alias: ACD3_177.22327.76

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_29_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1..252)
DNA (252bp) protein (84aa)
1..252 - (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
ACD3_29_2

Not on your lists

395..1171
DNA (777bp) protein (259aa)
hypothetical protein
seg (db=Seg db_id=seg from=217 to=233)
YebC-like (db=superfamily db_id=SSF75625 from=2 to=246 evalue=6.2e-60 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
DUF28 (db=HMMPfam db_id=PF01709 from=7 to=237 evalue=2.8e-57 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD3_29_3

Not on your lists

1189..1566
DNA (378bp) protein (126aa)
1189..1566 + (rbs_motif=TAA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE28247.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_29_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

1770..3086
DNA (1317bp) protein (439aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
seg (db=Seg db_id=seg from=207 to=223)
transmembrane_regions 9..26 Tax=ACD3
ACD3_29_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

3194..3670
DNA (477bp) protein (159aa)
coiled-coil (db=Coil db_id=coil from=55 to=79 evalue=NA)
seg (db=Seg db_id=seg from=49 to=62)
coiled-coil 55..79 Tax=ACD3
ACD3_29_6

Not on your lists

comp(3715..4311)
DNA (597bp) protein (199aa)
sodB; superoxide dismutase (EC:1.15.1.1)
SOD_MN (db=PatternScan db_id=PS00088 from=164 to=171 evalue=0.0 interpro_id=IPR019833 interpro_description=Manganese/iron superoxide dismutase, binding site GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
SUPEROXIDE DISMUTASE [FE] (db=HMMPanther db_id=PTHR11404:SF8 from=1 to=198 evalue=1.7e-84)
SUPEROXIDE DISMUTASE 2 (db=HMMPanther db_id=PTHR11404 from=1 to=198 evalue=1.7e-84 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
ACD3_29_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

4642..5271
DNA (630bp) protein (210aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=17)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=25 to=205 evalue=2.1e-26 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=47 to=209 evalue=7.9e-12 interpro_id=IPR012335 interpro_description=Thioredoxin fold)
ACD3_29_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

5341..5844
DNA (504bp) protein (168aa)
seg (db=Seg db_id=seg from=123 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
ACD3_29_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

6228..7127
DNA (900bp) protein (300aa)
6228..7127 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
ACD3_29_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(7139..8830)
DNA (1692bp) protein (564aa)
Thy1 protein
seg (db=Seg db_id=seg from=517 to=528)
seg (db=Seg db_id=seg from=548 to=558)
Thy1 (db=HMMPfam db_id=PF02511 from=109 to=290 evalue=3.3e-09 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
ACD3_29_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

8864..9010
DNA (147bp) protein (49aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions 17..39 Tax=ACD3
ACD3_29_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

9034..9660
DNA (627bp) protein (209aa)
9034..9660 + (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=ACD3
ACD3_29_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

9842..10210
DNA (369bp) protein (123aa)
9842..10210 + (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_29_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

10217..12010
DNA (1794bp) protein (598aa)
hypothetical protein
hypothetical protein
Threonyl-tRNA synthetase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PB66_CHIPD (db=UNIREF evalue=2.0e-129 bit_score=466.0 identity=43.61 coverage=95.9866220735786)
coiled-coil (db=Coil db_id=coil from=179 to=200 evalue=NA)
ACD3_29_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

12046..12159
DNA (114bp) protein (38aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
transmembrane_regions 15..34 Tax=ACD3
ACD3_29_16
unknown

Not on your lists

12388..13050
DNA (663bp) protein (221aa)
two-component response regulator
two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB (db=UNIREF evalue=9.0e-25 bit_score=117.0 identity=36.36 coverage=97.2850678733032)
seg (db=Seg db_id=seg from=171 to=186)
seg (db=Seg db_id=seg from=104 to=119)
ACD3_29_17
unknown

Not on your lists

13037..14242
DNA (1206bp) protein (402aa)
integral membrane sensor signal transduction histidine kinase
Sensor protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5H8_9CLOT (db=UNIREF evalue=3.0e-15 bit_score=87.0 identity=28.22 coverage=46.5174129353234)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=141)
ACD3_29_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

14524..14826
DNA (303bp) protein (101aa)
14524..14826 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_29_19
unknown

Not on your lists


comp(14838..15497)
DNA (660bp) protein (220aa)
rpsE; 30S ribosomal protein S5
Ribosomal protein S5 n=1 Tax=Turicibacter sp. PC909 RepID=D4W4Z7_9FIRM (db=UNIREF evalue=9.0e-33 bit_score=143.0 identity=48.97 coverage=65.4545454545455)
seg (db=Seg db_id=seg from=204 to=219)
seg (db=Seg db_id=seg from=167 to=176)
ACD3_29_20

Not on your lists


comp(15521..15862)
DNA (342bp) protein (114aa)
50S ribosomal protein L18 n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R8Z7_WEIPA (db=UNIREF evalue=2.0e-29 bit_score=130.0 identity=60.19 coverage=92.1052631578947)
rplR; 50S ribosomal protein L18
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=4 to=113 evalue=4.8e-41 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=21 to=113 evalue=2.2e-28)
ACD3_29_21

Not on your lists


comp(15908..16462)
DNA (555bp) protein (185aa)
LSU ribosomal protein L6P
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=180 evalue=2.8e-78 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=183 evalue=1.0e-64 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=183 evalue=1.0e-64)
ACD3_29_22
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(16490..16885)
DNA (396bp) protein (132aa)
30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=101 to=118 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=131 evalue=3.2e-37 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=3 to=131 evalue=5.6e-36 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_23

Not on your lists


comp(16931..17155)
DNA (225bp) protein (75aa)
rpsN; 30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=36 to=58 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=74 evalue=7.2e-20 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836:SF6 from=1 to=74 evalue=7.2e-20)
ACD3_29_24
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(17182..17721)
DNA (540bp) protein (180aa)
50S ribosomal protein L5
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=4 to=179 evalue=1.2e-60 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=4 to=179 evalue=1.2e-60)
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=1 to=179 evalue=1.5e-52 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_25
unknown

Not on your lists


comp(17786..18085)
DNA (300bp) protein (100aa)
50S ribosomal protein L24 n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B534_RUMGN (db=UNIREF evalue=4.0e-23 bit_score=110.0 identity=57.58 coverage=97.0)
LSU ribosomal protein L24P
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=98 evalue=6.8e-40 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=98 evalue=1.3e-30 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_26

Not on your lists


comp(18123..18491)
DNA (369bp) protein (123aa)
50S ribosomal protein L14
seg (db=Seg db_id=seg from=53 to=63)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=4.7e-76 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=122 evalue=1.7e-64 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_27
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(18519..18743)
DNA (225bp) protein (75aa)
30S ribosomal protein S17
seg (db=Seg db_id=seg from=23 to=39)
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=1 to=72 evalue=4.4e-34 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=71 evalue=8.5e-27 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_28
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(18763..18960)
DNA (198bp) protein (66aa)
coiled-coil (db=Coil db_id=coil from=1 to=36 evalue=NA)
seg (db=Seg db_id=seg from=2 to=22)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=12 to=62 evalue=2.7e-06 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
coiled-coil 1..36 Tax=ACD3
ACD3_29_29
unknown

Not on your lists


comp(18966..19379)
DNA (414bp) protein (138aa)
50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JYD5_9GAMM (db=UNIREF evalue=3.0e-42 bit_score=173.0 identity=65.12 coverage=92.7536231884058)
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=9.9e-76 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein L16p/L10e (db=superfamily db_id=SSF54686 from=3 to=134 evalue=1.1e-53 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_29_30
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(19426..20064)
DNA (639bp) protein (213aa)
30S ribosomal protein S3
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=211 evalue=2.6e-69 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
CHLOROPLAST 30S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760:SF10 from=90 to=211 evalue=3.3e-48)
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=90 to=211 evalue=3.3e-48)
Displaying items 1-30 of 35 in total

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