Alias: ACD3_1514.23511.75
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD3_45_1
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(188..466)
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lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=25 to=91 evalue=1.3e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=37 to=82 evalue=3.8e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=22 to=92 evalue=1.6e-09)
no description (db=HMMSmart db_id=SM00530 from=36 to=91 evalue=2.6e-09 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
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ACD3_45_2
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(506..874)
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ACD3_45_3
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(1070..1483)
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hypothetical protein
Transposase IS200-like (db=superfamily db_id=SSF143422 from=10 to=134 evalue=8.2e-14)
hypothetical protein alias=ACD3_1514.23511.75G0003,ACD3_1514.23511.75_3,ACD3_C00045G00003 id=50581 tax=ACD3 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD3
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ACD3_45_4
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(1528..1671)
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1528..1671 - (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_45_5
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(1854..3698)
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Aspartyl-tRNA synthetase n=2 Tax=Chlorobaculum RepID=SYD_CHLP8 (db=UNIREF evalue=2.0e-155 bit_score=553.0 identity=46.35 coverage=94.3089430894309)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspS_bact: aspartyl-tRNA synthetase (db=HMMTigr db_id=TIGR00459 from=1 to=610 evalue=1.3e-198 interpro_id=IPR004524 interpro_description=Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Molecular Function: ligase activity (GO:0016874))
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ACD3_45_6
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(3731..4009)
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3731..4009 - (rbs_motif=TTAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE28372.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_45_7
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
4141..5460
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=344)
transmembrane_regions (db=TMHMM db_id=tmhmm from=354 to=376)
seg (db=Seg db_id=seg from=10 to=19)
seg (db=Seg db_id=seg from=121 to=146)
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ACD3_45_8
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(5512..6378)
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seg (db=Seg db_id=seg from=72 to=84)
seg (db=Seg db_id=seg from=25 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
coiled-coil (db=Coil db_id=coil from=262 to=284 evalue=NA)
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ACD3_45_9
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(6542..7249)
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seg (db=Seg db_id=seg from=148 to=168)
seg (db=Seg db_id=seg from=27 to=51)
seg (db=Seg db_id=seg from=7 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
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ACD3_45_10
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
7535..8767
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Peptidase_C39 (db=HMMPfam db_id=PF03412 from=131 to=183 evalue=0.00011 interpro_id=IPR005074 interpro_description=Peptidase C39, bacteriocin processing GO=Molecular Function: ATP binding (GO:0005524), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: integral to membrane (GO:0016021))
Peptidase_C39 131..183 Tax=ACD3
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ACD3_45_11
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(9357..10412)
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seg (db=Seg db_id=seg from=62 to=73)
SIGMA70_2 (db=PatternScan db_id=PS00716 from=39 to=65 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=16 to=59 evalue=7.9e-12 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=86 evalue=1.3e-10 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
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ACD3_45_12
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(10740..11369)
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seg (db=Seg db_id=seg from=136 to=146)
seg (db=Seg db_id=seg from=76 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
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ACD3_45_13
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
11496..11774
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11496..11774 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE28379.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_45_14
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
11845..12039
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11845..12039 + (rbs_motif=TTAA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE28380.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_45_15
unknown
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Not on your lists |
12169..13413
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sortase family protein
sortase family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B20CB (db=UNIREF evalue=6.0e-12 bit_score=75.9 identity=29.65 coverage=39.2771084337349)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=176)
seg (db=Seg db_id=seg from=46 to=60)
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ACD3_45_16
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
13425..13736
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seg (db=Seg db_id=seg from=84 to=95)
seg (db=Seg db_id=seg from=61 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
transmembrane_regions 27..49 Tax=ACD3
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ACD3_45_17
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(13729..14409)
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13729..14409 - (rbs_motif=TAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE28383.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_45_18
unknown
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Not on your lists |
14581..15198
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hypothetical protein VspiD_19695 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745B81 (db=UNIREF evalue=6.0e-29 bit_score=130.0 identity=34.31 coverage=98.0582524271845)
haloacid dehalogenase domain protein hydrolase (db=KEGG evalue=5.0e-20 bit_score=100.0 identity=28.43 coverage=98.0582524271845)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=203 evalue=7.8e-31)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=2 to=203 evalue=4.7e-18)
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ACD3_45_19
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
15229..15780
|
hypothetical protein
DUF1697 (db=HMMPfam db_id=PF08002 from=1 to=136 evalue=2.8e-35 interpro_id=IPR012545 interpro_description=Protein of unknown function DUF1697)
DUF1697 domain containing protein alias=ACD3_1514.23511.75_19,ACD3_1514.23511.75G0019,ACD3_C00045G00019 id=50584 tax=ACD3 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
DUF1697 domain containing protein Tax=ACD3
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ACD3_45_20
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
15798..16376
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mcbG; protein mcbG
Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9DYR4_9FLAO (db=UNIREF evalue=3.0e-30 bit_score=134.0 identity=37.84 coverage=95.3367875647668)
Pentapeptide repeat-like (db=superfamily db_id=SSF141571 from=11 to=192 evalue=2.4e-40)
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ACD3_45_21
unknown
|
Not on your lists |
16389..16709
|
Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YVX7_9SYNE (db=UNIREF evalue=5.0e-09 bit_score=63.5 identity=39.42 coverage=96.2616822429907)
seg (db=Seg db_id=seg from=34 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=19)
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ACD3_45_22
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(16695..16943)
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excinuclease ABC subunit C domain-containing protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=73 evalue=2.9e-13 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=73 evalue=1.2e-11 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR20208 from=1 to=78 evalue=1.6e-05)
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ACD3_45_23
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(17288..17740)
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Ribosomal RNA large subunit methyltransferase H
seg (db=Seg db_id=seg from=41 to=61)
alpha/beta knot (db=superfamily db_id=SSF75217 from=1 to=149 evalue=4.4e-37)
SPOUT_MTase (db=HMMPfam db_id=PF02590 from=2 to=149 evalue=4.1e-30 interpro_id=IPR003742 interpro_description=SPOUT methyltransferase, predicted GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
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ACD3_45_24
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(17768..18277)
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17768..18277 - (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
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ACD3_45_25
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(18336..19073)
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S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=53 to=219 evalue=5.6e-16)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=69 to=160 evalue=3.9e-11)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=63 to=139 evalue=6.8e-11 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
METHLYTRANSFERASE, UBIE/COQ5 FAMILY (db=HMMPanther db_id=PTHR10108:SF26 from=59 to=160 evalue=4.1e-09)
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ACD3_45_26
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
19425..21629
|
hypothetical protein
hypothetical protein
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBJ2_KANKD (db=UNIREF evalue=0.0 bit_score=801.0 identity=56.49 coverage=88.7074829931973)
seg (db=Seg db_id=seg from=317 to=330)
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ACD3_45_27
unknown
|
Not on your lists |
21740..21910
|
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XBZ1_OXAFO (db=UNIREF evalue=3.0e-08 bit_score=60.5 identity=67.57 coverage=63.1578947368421)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XBZ1_OXAFO Tax=ACD3
hypothetical protein
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ACD3_45_28
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
22441..23142
|
hypothetical protein
RADICAL_ACTIVATING (db=PatternScan db_id=PS01087 from=15 to=36 evalue=0.0 interpro_id=IPR001989 interpro_description=Radical-activating enzyme, conserved site GO=Biological Process: oxygen and reactive oxygen species metabolic process (GO:0006800), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation reduction (GO:0055114))
NrdG2: anaerobic ribonucleoside-triphosphate (db=HMMTigr db_id=TIGR02495 from=2 to=196 evalue=6.8e-46 interpro_id=IPR012840 interpro_description=Ribonucleoside-triphosphate reductase, anaerobic-like)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=13 to=178 evalue=5.5e-14)
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ACD3_45_29
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
23216..23575
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=22 to=43)
seg (db=Seg db_id=seg from=44 to=55)
Pili subunits (db=superfamily db_id=SSF54523 from=22 to=64 evalue=2.8e-14)
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