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ACD41_21

Alias: ACD41_70308.28813.16

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_21_1

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123..623
DNA (501bp) protein (167aa)
Sensor protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F4L6_9ALTE (db=UNIREF evalue=7.0e-45 bit_score=182.0 identity=54.72 coverage=94.6107784431138)
diguanylate cyclase
GAF domain-like (db=superfamily db_id=SSF55781 from=27 to=162 evalue=6.6e-24)
GAF (db=HMMPfam db_id=PF01590 from=28 to=156 evalue=2.8e-13 interpro_id=IPR003018 interpro_description=GAF)
ACD41_21_2

Not on your lists

633..1562
DNA (930bp) protein (310aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Aspartate/ornithine carbamoyltransferase (db=superfamily db_id=SSF53671 from=1 to=309 evalue=8.8e-59 interpro_id=IPR006130 interpro_description=Aspartate/ornithine carbamoyltransferase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: amino acid binding (GO:0016597), Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743))
OTCace_N (db=HMMPfam db_id=PF02729 from=4 to=144 evalue=2.1e-31 interpro_id=IPR006132 interpro_description=Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743))
no description (db=Gene3D db_id=G3DSA:3.40.50.1370 from=1 to=150 evalue=2.4e-28)
ACD41_21_3

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1861..2052
DNA (192bp) protein (64aa)
translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=1 to=63 evalue=1.3e-33 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=63 evalue=3.6e-24 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
eIF-1a (db=HMMPfam db_id=PF01176 from=1 to=62 evalue=6.7e-23 interpro_id=IPR006196 interpro_description=S1, IF1 type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD41_21_4

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2058..2171
DNA (114bp) protein (38aa)
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=36 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L36 (db=HMMPfam db_id=PF00444 from=1 to=37 evalue=7.5e-18 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=37 evalue=5.4e-17 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmJ_bact: ribosomal protein L36 (db=HMMTigr db_id=TIGR01022 from=1 to=37 evalue=6.0e-16 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_21_5

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2180..2572
DNA (393bp) protein (131aa)
rpsM; 30S ribosomal protein S13
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=116 evalue=4.2e-56 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S13 (db=HMMPanther db_id=PTHR10871:SF1 from=1 to=124 evalue=1.8e-42)
30S/40S RIBOSOMAL PROTEIN (db=HMMPanther db_id=PTHR10871 from=1 to=124 evalue=1.8e-42)
ACD41_21_6

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2588..2989
DNA (402bp) protein (134aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=7 to=25)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=101 to=123 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=14 to=130 evalue=2.6e-65 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_21_7

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3004..3612
DNA (609bp) protein (203aa)
30S ribosomal protein S4P
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=91 to=115 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=202 evalue=2.4e-83 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=202 evalue=6.0e-60)
ACD41_21_8

Not on your lists

3632..4330
DNA (699bp) protein (233aa)
DNA-directed RNA polymerase subunit alpha
no description (db=HMMSmart db_id=SM00662 from=18 to=226 evalue=8.9e-69 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=18 to=232 evalue=3.8e-66 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
Insert subdomain of RNA polymerase alpha subunit (db=superfamily db_id=SSF56553 from=48 to=170 evalue=3.3e-42 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350), Molecular Function: protein dimerization activity (GO:0046983))
ACD41_21_9

Not on your lists


4317..4670
DNA (354bp) protein (118aa)
rplQ; 50S ribosomal protein L17
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=117 evalue=5.0e-32)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=117 evalue=5.0e-32 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_21_10

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4675..5013
DNA (339bp) protein (113aa)
50S ribosomal protein L13
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=7 to=111 evalue=5.7e-31 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545:SF2 from=8 to=111 evalue=2.5e-21 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545 from=8 to=111 evalue=2.5e-21 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_21_11

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5015..5422
DNA (408bp) protein (136aa)
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPQ6_9BACE (db=UNIREF evalue=6.0e-27 bit_score=122.0 identity=50.0 coverage=95.5882352941177)
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=74 to=92 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=9 to=135 evalue=5.1e-37 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
ACD41_21_12

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5441..6904
DNA (1464bp) protein (488aa)
polysaccharide biosynthesis protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
transmembrane_regions (db=TMHMM db_id=tmhmm from=253 to=275)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=318)
ACD41_21_13

Not on your lists

6880..7911
DNA (1032bp) protein (344aa)
group 1 glycosyl transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=7 to=340 evalue=6.5e-60)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=50 to=340 evalue=8.2e-40)
Glycos_transf_1 (db=HMMPfam db_id=PF00534 from=163 to=322 evalue=6.1e-35 interpro_id=IPR001296 interpro_description=Glycosyl transferase, group 1 GO=Biological Process: biosynthetic process (GO:0009058))
ACD41_21_14

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7904..8746
DNA (843bp) protein (281aa)
glycosyl transferase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=257 to=279)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=274 evalue=2.5e-44)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=230 evalue=5.8e-30)
ACD41_21_15

Not on your lists

8724..10127
DNA (1404bp) protein (468aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=158 to=180)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=232)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=278)
ACD41_21_16

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10111..11043
DNA (933bp) protein (311aa)
glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=283 evalue=1.1e-53)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=264 evalue=8.4e-40)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=6 to=118 evalue=1.5e-28 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD41_21_17

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11030..11854
DNA (825bp) protein (275aa)
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=18 to=33)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=238 evalue=9.0e-49)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=5 to=241 evalue=4.6e-31)
ACD41_21_18

Not on your lists

11838..13841
DNA (2004bp) protein (668aa)
GDP-mannose 4,6 dehydratase ISS
seg (db=Seg db_id=seg from=9 to=22)
seg (db=Seg db_id=seg from=210 to=222)
Uncharacterized protein {ECO:0000313|EMBL:EKD78514.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_21_19

Not on your lists

13855..14862
DNA (1008bp) protein (336aa)
MreB/Mrl family cell shape determining protein
MreB/Mrl family cell shape determining protein
Cell shape determining protein, MreB/Mrl family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7E1_SPHTD (db=UNIREF evalue=5.0e-101 bit_score=371.0 identity=58.66 coverage=97.3214285714286)
seg (db=Seg db_id=seg from=132 to=148)
ACD41_21_20

Not on your lists

14859..15983
DNA (1125bp) protein (375aa)
group 1 glycosyl transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=15 to=371 evalue=3.3e-60)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=87 to=369 evalue=7.5e-56)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=87 to=369 evalue=7.5e-56)
ACD41_21_21

Not on your lists

15988..16830
DNA (843bp) protein (281aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
seg (db=Seg db_id=seg from=87 to=98)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=4 to=163 evalue=6.1e-28)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=196 evalue=1.0e-22)
ACD41_21_22

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16827..17939
DNA (1113bp) protein (371aa)
hypothetical protein
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=3 to=217 evalue=2.8e-34)
no description (db=Gene3D db_id=G3DSA:2.130.10.140 from=27 to=178 evalue=3.1e-26)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=227 to=358 evalue=8.6e-13)
ACD41_21_23

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17945..18478
DNA (534bp) protein (178aa)
Ribosome-recycling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCQ4_9BACT (db=UNIREF evalue=2.0e-34 bit_score=148.0 identity=41.71 coverage=97.752808988764)
ribosome recycling factor
RRF (db=HMMPfam db_id=PF01765 from=11 to=175 evalue=3.3e-50 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
Ribosome recycling factor, RRF (db=superfamily db_id=SSF55194 from=1 to=176 evalue=5.9e-47 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
ACD41_21_24

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18475..19569
DNA (1095bp) protein (365aa)
putative membrane-associated zinc metalloprotease
seg (db=Seg db_id=seg from=130 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=97 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
ACD41_21_25

Not on your lists

19589..20815
DNA (1227bp) protein (409aa)
prolyl-tRNA synthetase
Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM (db=UNIREF evalue=6.0e-84 bit_score=315.0 identity=42.27 coverage=86.7970660146699)
seg (db=Seg db_id=seg from=359 to=371)
TRNA SYNTHETASE-RELATED (db=HMMPanther db_id=PTHR11451 from=38 to=405 evalue=7.8e-142)
ACD41_21_26

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20808..21848
DNA (1041bp) protein (347aa)
rod shape-determining protein MreB
mreB: cell shape determining protein, MreB/M (db=HMMTigr db_id=TIGR00904 from=10 to=338 evalue=1.8e-183 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
MreB_Mbl (db=HMMPfam db_id=PF06723 from=10 to=337 evalue=8.4e-139 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
no description (db=Gene3D db_id=G3DSA:3.30.420.40 from=8 to=164 evalue=3.7e-59)
ACD41_21_27

Not on your lists

21845..22654
DNA (810bp) protein (270aa)
Cell shape-determining protein MreC
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
seg (db=Seg db_id=seg from=11 to=28)
MreC (db=HMMPfam db_id=PF04085 from=114 to=266 evalue=3.0e-25 interpro_id=IPR007221 interpro_description=Rod shape-determining protein MreC GO=Biological Process: regulation of cell shape (GO:0008360))
ACD41_21_28

Not on your lists

22651..23154
DNA (504bp) protein (168aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=97 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
ACD41_21_29

Not on your lists

24928..25134
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=37 to=52)
Transpeptidase (db=HMMPfam db_id=PF00905 from=3 to=62 evalue=2.0e-11 interpro_id=IPR001460 interpro_description=Penicillin-binding protein, transpeptidase GO=Molecular Function: penicillin binding (GO:0008658), Biological Process: peptidoglycan-based cell wall biogenesis (GO:0009273))
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=5 to=67 evalue=3.5e-11 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=5 to=62 evalue=3.1e-08)
ACD41_21_30

Not on your lists

25151..25618
DNA (468bp) protein (156aa)
Transcription elongation factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJR5_9FIRM (db=UNIREF evalue=3.0e-36 bit_score=154.0 identity=49.36 coverage=98.7179487179487)
transcription elongation factor GreA
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
greA: transcription elongation factor GreA (db=HMMTigr db_id=TIGR01462 from=7 to=155 evalue=8.2e-54 interpro_id=IPR006359 interpro_description=Transcription elongation factor GreA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Displaying items 1-30 of 32 in total

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