Alias: ACD52_101382.13511.7
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD52_27_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
2..1168
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ATP-dependent DNA helicase RecG n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP1_THET1 (db=UNIREF evalue=6.0e-102 bit_score=374.0 identity=50.38 coverage=97.172236503856)
hypothetical protein
hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=25 to=315 evalue=5.3e-48)
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ACD52_27_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
1226..2767
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1226..2767 + (rbs_motif=AAT rbs_spacer=8bp)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(2885..2977)
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2885..2977 - (rbs_motif=TAA rbs_spacer=12bp)
NusB antitermination factor; K03625 N utilization substance protein B Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_4
uncultured bacterium, Bacteria
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Not on your lists |
3021..3383
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NusB antitermination factor
NusB (db=HMMPfam db_id=PF01029 from=17 to=113 evalue=4.7e-28 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
nusB: transcription antitermination factor N (db=HMMTigr db_id=TIGR01951 from=7 to=115 evalue=2.6e-26 interpro_id=IPR011605 interpro_description=NusB antitermination factor GO=Molecular Function: transcription termination factor activity (GO:0003715), Biological Process: transcription termination (GO:0006353))
NusB-like (db=superfamily db_id=SSF48013 from=7 to=112 evalue=3.8e-25 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD52_27_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
3384..3857
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Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR30_9CLOT (db=UNIREF evalue=2.0e-29 bit_score=131.0 identity=52.63 coverage=82.9113924050633)
rnc; ribonuclease III (EC:3.1.26.3)
seg (db=Seg db_id=seg from=138 to=153)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=37 to=45 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
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ACD52_27_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
3878..4102
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rnc; ribonuclease III (EC:3.1.26.3)
seg (db=Seg db_id=seg from=58 to=66)
no description (db=HMMSmart db_id=SM00358 from=4 to=71 evalue=2.7e-21 interpro_id=IPR001159 interpro_description=Double-stranded RNA-binding GO=Molecular Function: double-stranded RNA binding (GO:0003725), Cellular Component: intracellular (GO:0005622))
dsRNA-binding domain-like (db=superfamily db_id=SSF54768 from=1 to=73 evalue=4.3e-20)
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ACD52_27_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
4118..4345
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ribosomal protein S16; K02959 small subunit ribosomal protein S16 (db=KEGG evalue=1.0e-08 bit_score=62.0 identity=43.06 coverage=90.7894736842105)
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=73 evalue=1.4e-18 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S16 (db=superfamily db_id=SSF54565 from=1 to=75 evalue=5.5e-17 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD52_27_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
4342..4572
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Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=3 to=68 evalue=7.0e-09 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=32 to=71 evalue=1.9e-06 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=28 to=76 evalue=9.246 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))
Prokaryotic type KH domain (KH-domain type II) 3..68 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(4569..5303)
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coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
seg (db=Seg db_id=seg from=27 to=38)
coiled-coil 58..79 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(5308..5835)
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seg (db=Seg db_id=seg from=130 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
coiled-coil (db=Coil db_id=coil from=54 to=92 evalue=NA)
coiled-coil 54..92 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(5838..6854)
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hypothetical protein
Tfp pilus assembly protein, ATPase PilM (db=HMMPIR db_id=PIRSF019169 from=1 to=338 evalue=6.1e-70 interpro_id=IPR005883 interpro_description=Type IV pilus assembly protein PilM)
pilM: type IV pilus assembly protein PilM (db=HMMTigr db_id=TIGR01175 from=1 to=338 evalue=3.3e-45 interpro_id=IPR005883 interpro_description=Type IV pilus assembly protein PilM)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=169 to=336 evalue=6.0e-26)
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ACD52_27_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(6851..7783)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=11 to=29)
transmembrane_regions 12..34 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_13
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(7809..8309)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=137 evalue=3.3e-13)
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ACD52_27_14
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(8313..8777)
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seg (db=Seg db_id=seg from=140 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Pili subunits (db=superfamily db_id=SSF54523 from=6 to=141 evalue=3.9e-20)
BCTERIALGSPG (db=FPrintScan db_id=PR00813 from=41 to=59 evalue=7.0e-09 interpro_id=IPR000983 interpro_description=Bacterial general secretion pathway protein G GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
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ACD52_27_15
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(8774..9238)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=0.019 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions 9..31 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_16
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(9235..9747)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=63 evalue=2.3e-12)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=4.2e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions 10..32 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_17
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(9765..10199)
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seg (db=Seg db_id=seg from=7 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=4 to=24 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=6 to=104 evalue=6.1e-21)
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ACD52_27_18
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(10193..10699)
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seg (db=Seg db_id=seg from=107 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=13 to=31)
seg (db=Seg db_id=seg from=71 to=84)
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ACD52_27_19
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(10696..11229)
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seg (db=Seg db_id=seg from=10 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions 10..32 Tax=RBG_16_RIF_OP11_02_41_13_curated
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ACD52_27_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(11213..11998)
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pilD; type 4 prepilin-like proteins leader peptide-processing enzyme PilD (EC:3.4.23.43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
seg (db=Seg db_id=seg from=162 to=175)
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ACD52_27_21
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria
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Not on your lists |
comp(12740..13543)
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=261)
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