ggKbase home page

ACD52_117

Alias: ACD52_521182.7636.7

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_117_1

Not on your lists

1..339
DNA (339bp) protein (113aa)
RNA polymerase sigma factor SigB
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=31 to=102 evalue=9.1e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=51 to=92 evalue=9.1e-09 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=31 to=112 evalue=1.9e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD52_117_2

Not on your lists

736..1215
DNA (480bp) protein (160aa)
hypothetical protein
seg (db=Seg db_id=seg from=127 to=152)
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=1 to=159 evalue=5.8e-48 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=159 evalue=1.0e-47 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD52_117_3

Not on your lists


1222..1437
DNA (216bp) protein (72aa)
30S ribosomal protein S18
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=2 to=70 evalue=1.2e-21 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S18 (db=HMMPfam db_id=PF01084 from=13 to=65 evalue=1.4e-19 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=1 to=70 evalue=5.9e-18)
ACD52_117_4

Not on your lists

1448..2686
DNA (1239bp) protein (413aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=25 to=42)
prc: C-terminal processing peptidase (db=HMMTigr db_id=TIGR00225 from=73 to=412 evalue=2.1e-84 interpro_id=IPR004447 interpro_description=Peptidase S41A, C-terminal peptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
ACD52_117_5

Not on your lists

2716..3867
DNA (1152bp) protein (384aa)
Trypsin
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=60 to=79)
seg (db=Seg db_id=seg from=13 to=25)
ACD52_117_6

Not on your lists

4005..4709
DNA (705bp) protein (235aa)
4005..4709 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62220.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_117_7

Not on your lists

comp(4684..5382)
DNA (699bp) protein (233aa)
Peptide chain release factor 1
RF_PROK_I (db=PatternScan db_id=PS00745 from=114 to=130 evalue=0.0 interpro_id=IPR000352 interpro_description=Class I peptide chain release factor GO=Molecular Function: translation release factor activity (GO:0003747), Biological Process: translational termination (GO:0006415))
PEPTIDE CHAIN RELEASE FACTOR (db=HMMPanther db_id=PTHR11075 from=3 to=228 evalue=1.2e-103)
PEPTIDE CHAIN RELEASE FACTOR 1 (db=HMMPanther db_id=PTHR11075:SF9 from=3 to=228 evalue=1.2e-103)
ACD52_117_8

Not on your lists


comp(5397..5714)
DNA (318bp) protein (106aa)
50S ribosomal protein L31
seg (db=Seg db_id=seg from=59 to=70)
seg (db=Seg db_id=seg from=74 to=85)
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=35 to=56 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD52_117_9

Not on your lists

comp(5764..6684)
DNA (921bp) protein (307aa)
DMT(drug/metabolite transporter) superfamily permease
UAA transporter family n=11 Tax=Clostridium RepID=C1FKP2_CLOBJ (db=UNIREF evalue=1.0e-11 bit_score=73.9 identity=28.76 coverage=94.1368078175896)
transmembrane_regions (db=TMHMM db_id=tmhmm from=279 to=296)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=275)
ACD52_117_10

Not on your lists


comp(6681..7670)
DNA (990bp) protein (330aa)
histidyl-tRNA synthetase
HISTIDYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11476 from=1 to=326 evalue=1.5e-65 interpro_id=IPR004516 interpro_description=Histidyl-tRNA synthetase, class IIa GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: histidine-tRNA ligase activity (GO:0004821), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: histidyl-tRNA aminoacylation (GO:0006427))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=230 evalue=9.1e-40)
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=1 to=224 evalue=3.4e-36)
Displaying 10 items

View Taxonomy