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ACD5_86

Alias: ACD5_197151.2618.6

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_86_1

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comp(3..98)
DNA (96bp) protein (32aa)
3..98 - (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25704.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_86_2

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102..305
DNA (204bp) protein (68aa)
Preprotein translocase subunit SecE
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=9 to=37 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
SecE (db=HMMPfam db_id=PF00584 from=6 to=61 evalue=2.3e-18 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
ACD5_86_3

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325..846
DNA (522bp) protein (174aa)
nusG; Transcription antiterminator NusG
Transcription antitermination protein nusG n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DW36_EIKCO (db=UNIREF evalue=6.0e-33 bit_score=143.0 identity=43.26 coverage=98.2758620689655)
NUSG (db=PatternScan db_id=PS01014 from=157 to=166 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=4 to=173 evalue=7.2e-43 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD5_86_4

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856..1281
DNA (426bp) protein (142aa)
rplK; ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=126 to=141 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=7.4e-76 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=9 to=140 evalue=3.0e-71 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_86_5

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1295..1993
DNA (699bp) protein (233aa)
rplA; ribosomal protein L1
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=120 to=139 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=229 evalue=2.4e-118 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=1.7e-98 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
ACD5_86_6

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2148..2561
DNA (414bp) protein (138aa)
rplJ; ribosomal protein L10
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=1 to=65 evalue=3.6e-14 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
Q30KS2_CANFA_Q30KS2; (db=BlastProDom db_id=PD968187 from=4 to=108 evalue=0.0006)
Uncharacterized protein {ECO:0000313|EMBL:EKE25702.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_86_7
unknown

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2591..2650
DNA (60bp) protein (20aa)
2591..2650 + (rbs_motif=TAA rbs_spacer=9bp)
Displaying 7 items

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