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ACD15_13

Alias: ACD15_22117.29251.17

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_13_1

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
3..125 - (rbs_motif=TAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11425.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_2

Not on your lists

comp(811..1581)
DNA (771bp) protein (257aa)
seg (db=Seg db_id=seg from=64 to=81)
seg (db=Seg db_id=seg from=12 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
coiled-coil (db=Coil db_id=coil from=56 to=81 evalue=NA)
ACD15_13_3

Not on your lists

1819..2520
DNA (702bp) protein (234aa)
hypothetical protein
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=193 evalue=2.8e-10 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=1 to=114 evalue=0.001 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
GNAT (db=ProfileScan db_id=PS51186 from=3 to=203 evalue=10.972 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase GO=Molecular Function: N-acetyltransferase activity (GO:0008080), Biological Process: metabolic process (GO:0008152))
ACD15_13_4

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2511..3470
DNA (960bp) protein (320aa)
Archaeal-type Fe-S oxidoreductase
Uncharacterised protein with radical SAM domain (db=HMMPIR db_id=PIRSF004954 from=3 to=319 evalue=4.9e-17 interpro_id=IPR005909 interpro_description=Conserved hypothetical protein CHP01210)
no description (db=HMMSmart db_id=SM00729 from=28 to=262 evalue=1.8e-07 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)
Uncharacterized protein {ECO:0000313|EMBL:EKE11423.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_5

Not on your lists

3544..5127
DNA (1584bp) protein (528aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=253 to=275)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
ACD15_13_6

Not on your lists

6137..7045
DNA (909bp) protein (303aa)
histidine kinase (EC:2.7.13.3)
seg (db=Seg db_id=seg from=136 to=149)
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=137 to=298 evalue=2.8e-33 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ACD15_13_7

Not on your lists

7042..7314
DNA (273bp) protein (91aa)
7042..7314 + (rbs_motif=AAT rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11420.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_8

Not on your lists

comp(7461..10880)
DNA (3420bp) protein (1140aa)
cation/multidrug efflux pump
transmembrane_regions (db=TMHMM db_id=tmhmm from=417 to=439)
transmembrane_regions (db=TMHMM db_id=tmhmm from=465 to=487)
transmembrane_regions (db=TMHMM db_id=tmhmm from=497 to=519)
ACD15_13_9

Not on your lists

comp(10911..12023)
DNA (1113bp) protein (371aa)
RND family efflux transporter MFP subunit
seg (db=Seg db_id=seg from=145 to=164)
seg (db=Seg db_id=seg from=113 to=125)
seg (db=Seg db_id=seg from=45 to=57)
ACD15_13_10

Not on your lists

comp(12056..12526)
DNA (471bp) protein (157aa)
coiled-coil (db=Coil db_id=coil from=136 to=157 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=10 to=144 evalue=4.0e-20)
no description (db=HMMSmart db_id=SM00347 from=27 to=129 evalue=3.9e-14 interpro_id=IPR000835 interpro_description=HTH transcriptional regulator, MarR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=34 to=109 evalue=1.1e-07 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD15_13_11

Not on your lists

12747..14198
DNA (1452bp) protein (484aa)
hypothetical protein
ABC transporter, ATP-binding protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VDQ6_9RHOB (db=UNIREF evalue=6.0e-51 bit_score=205.0 identity=30.55 coverage=94.4214876033058)
seg (db=Seg db_id=seg from=103 to=115)
coiled-coil (db=Coil db_id=coil from=257 to=278 evalue=NA)
ACD15_13_12

Not on your lists

14323..14523
DNA (201bp) protein (67aa)
Probable cold shock protein scoF n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQQ8_9PLAN (db=UNIREF evalue=4.0e-13 bit_score=77.0 identity=63.49 coverage=91.044776119403)
cold-shock protein
COLD_SHOCK (db=PatternScan db_id=PS00352 from=14 to=33 evalue=0.0 interpro_id=IPR019844 interpro_description=Cold-shock conserved site)
CSD (db=HMMPfam db_id=PF00313 from=1 to=66 evalue=4.8e-21 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD15_13_13

Not on your lists

14785..16047
DNA (1263bp) protein (421aa)
Putative uncharacterized protein n=1 Tax=Synergistetes bacterium SGP1 RepID=D4M788_9BACT (db=UNIREF evalue=7.0e-114 bit_score=414.0 identity=46.99 coverage=97.3871733966746)
HI0933 family protein
HI0933 family protein
TIGR00275: flavoprotein, HI0933 family (db=HMMTigr db_id=TIGR00275 from=10 to=416 evalue=1.5e-183 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
ACD15_13_14

Not on your lists

16231..18039
DNA (1809bp) protein (603aa)
seg (db=Seg db_id=seg from=552 to=564)
seg (db=Seg db_id=seg from=310 to=326)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=497 to=601 evalue=3.1e-10)
CHAP (db=ProfileScan db_id=PS50911 from=473 to=599 evalue=12.195 interpro_id=IPR007921 interpro_description=Cysteine, histidine-dependent amidohydrolase/peptidase)
ACD15_13_15

Not on your lists

comp(18129..19289)
DNA (1161bp) protein (387aa)
seg (db=Seg db_id=seg from=43 to=54)
seg (db=Seg db_id=seg from=12 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE11407.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_16

Not on your lists

19522..19890
DNA (369bp) protein (123aa)
coiled-coil (db=Coil db_id=coil from=1 to=29 evalue=NA)
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE11408.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_17

Not on your lists

19968..20675
DNA (708bp) protein (236aa)
DNA alkylation repair enzyme
DNA_alkylation (db=HMMPfam db_id=PF08713 from=7 to=224 evalue=2.0e-68 interpro_id=IPR014825 interpro_description=DNA alkylation repair enzyme)
ARM repeat (db=superfamily db_id=SSF48371 from=10 to=227 evalue=3.4e-45 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
Uncharacterized protein {ECO:0000313|EMBL:EKE11409.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_18

Not on your lists

20901..22679
DNA (1779bp) protein (593aa)
GTP-binding protein TypA/BipA
GTP-binding protein TypA/BipA
GTP-binding protein TypA n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R5Q0_9FIRM (db=UNIREF evalue=0.0 bit_score=665.0 identity=54.42 coverage=99.6627318718381)
TypA_BipA: GTP-binding protein TypA/BipA (db=HMMTigr db_id=TIGR01394 from=3 to=589 evalue=0.0 interpro_id=IPR006298 interpro_description=GTP-binding protein TypA GO=Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622))
ACD15_13_19

Not on your lists

comp(22759..23454)
DNA (696bp) protein (232aa)
hypothetical protein; K03478 hypothetical protein (db=KEGG evalue=2.0e-10 bit_score=69.7 identity=22.61 coverage=90.5172413793103)
seg (db=Seg db_id=seg from=217 to=228)
seg (db=Seg db_id=seg from=48 to=59)
YdjC (db=HMMPfam db_id=PF04794 from=6 to=226 evalue=2.6e-30 interpro_id=IPR006879 interpro_description=YdjC-like protein)
ACD15_13_20

Not on your lists

23662..23925
DNA (264bp) protein (88aa)
hypothetical protein
DUF156 (db=HMMPfam db_id=PF02583 from=2 to=81 evalue=2.0e-17 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
hypothetical protein alias=ACD15_C00013G00020,ACD15_22117.29251.17G0020,ACD15_22117.29251.17_20 id=8187 tax=ACD15 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE11412.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_21

Not on your lists

24038..25021
DNA (984bp) protein (328aa)
Putative uncharacterized protein C4_0035 n=1 Tax=uncultured archaeon RepID=Q2Y4Q3_9ARCH (db=UNIREF evalue=1.0e-08 bit_score=64.3 identity=26.32 coverage=61.280487804878)
seg (db=Seg db_id=seg from=201 to=217)
seg (db=Seg db_id=seg from=19 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
ACD15_13_22

Not on your lists

25126..26187
DNA (1062bp) protein (354aa)
putative permease
seg (db=Seg db_id=seg from=62 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
ACD15_13_23

Not on your lists

26184..27083
DNA (900bp) protein (300aa)
prolipoprotein diacylglyceryl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
seg (db=Seg db_id=seg from=90 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
ACD15_13_24

Not on your lists

27114..27491
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=8 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=2 to=120 evalue=4.5e-07 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
GLUTAREDOXIN_2 (db=ProfileScan db_id=PS51354 from=27 to=125 evalue=9.287 interpro_id=IPR002109 interpro_description=Glutaredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
ACD15_13_25

Not on your lists

27573..28655
DNA (1083bp) protein (361aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
Glucosaminidase (db=HMMPfam db_id=PF01832 from=240 to=358 evalue=7.2e-05 interpro_id=IPR002901 interpro_description=Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase GO=Molecular Function: amidase activity (GO:0004040), Biological Process: peptidoglycan catabolic process (GO:0009253))
Uncharacterized protein {ECO:0000313|EMBL:EKE11417.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_13_26

Not on your lists

28766..29287
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=2 to=10)
Uncharacterized protein {ECO:0000313|EMBL:EKE11418.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 26 items

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