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ACD15_17

Alias: ACD15_838.15597.17

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_17_1

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comp(2..2875)
DNA (2874bp) protein (958aa)
Cell wall surface anchor family protein, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZC17_9BACT (db=UNIREF evalue=8.0e-07 bit_score=60.5 identity=32.26 coverage=19.8329853862213)
seg (db=Seg db_id=seg from=694 to=707)
seg (db=Seg db_id=seg from=608 to=622)
seg (db=Seg db_id=seg from=563 to=573)
ACD15_17_2

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3065..3514
DNA (450bp) protein (150aa)
smpB; ssrA RNA (tmRNA)-binding protein
seg (db=Seg db_id=seg from=114 to=131)
SSRP (db=PatternScan db_id=PS01317 from=22 to=34 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=3 to=146 evalue=4.1e-75 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD15_17_3

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4263..4721
DNA (459bp) protein (153aa)
infC; translation initiation factor IF-3
IF3 (db=PatternScan db_id=PS00938 from=41 to=54 evalue=0.0 interpro_id=IPR019813 interpro_description=Translation initiation factor 3, conserved site GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=5 to=151 evalue=5.9e-36 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=152 evalue=2.1e-32 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD15_17_4

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4782..4991
DNA (210bp) protein (70aa)
seg (db=Seg db_id=seg from=3 to=23)
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=5.4e-14)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=1.2e-10 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=60 evalue=4.9e-10 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_17_5

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5097..5441
DNA (345bp) protein (115aa)
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 n=2 Tax=Oxalobacter formigenes RepID=C3X702_OXAFO (db=UNIREF evalue=1.0e-23 bit_score=111.0 identity=56.14 coverage=98.2608695652174)
seg (db=Seg db_id=seg from=48 to=59)
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=3.5e-47 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD15_17_6

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comp(5481..5669)
DNA (189bp) protein (63aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
seg (db=Seg db_id=seg from=4 to=11)
Uncharacterized protein {ECO:0000313|EMBL:EKE10723.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_17_7

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comp(5711..6439)
DNA (729bp) protein (243aa)
hypothetical protein
HAD-SF-IB-hyp1: HAD hydrolase, family (db=HMMTigr db_id=TIGR01490 from=7 to=207 evalue=2.3e-23 interpro_id=IPR006385 interpro_description=HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial)
HAD-like (db=superfamily db_id=SSF56784 from=4 to=227 evalue=5.8e-20)
PHOSPHOSERINE PHOSPHATASE (db=HMMPanther db_id=PTHR10000 from=85 to=218 evalue=2.7e-17)
ACD15_17_8

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comp(6502..6993)
DNA (492bp) protein (164aa)
rRNA methylase
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EQK2_CHLPB (db=UNIREF evalue=2.0e-29 bit_score=131.0 identity=41.4 coverage=87.8048780487805)
seg (db=Seg db_id=seg from=47 to=64)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=2 to=161 evalue=5.2e-39)
ACD15_17_9

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comp(6994..7662)
DNA (669bp) protein (223aa)
3'-5' exonuclease, PolB
Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XH06_9BACT (db=UNIREF evalue=5.0e-41 bit_score=171.0 identity=38.56 coverage=98.6547085201794)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=216 evalue=3.2e-24 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
Exon_PolB (db=HMMPfam db_id=PF10108 from=84 to=213 evalue=2.5e-23 interpro_id=IPR019288 interpro_description=Predicted 3'-5' exonuclease, PolB-like)
ACD15_17_10

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comp(7726..8514)
DNA (789bp) protein (263aa)
seg (db=Seg db_id=seg from=65 to=77)
seg (db=Seg db_id=seg from=2 to=18)
Uncharacterized protein {ECO:0000313|EMBL:EKE10727.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_17_11

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comp(8877..10016)
DNA (1140bp) protein (380aa)
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDF9_THET1 (db=UNIREF evalue=2.0e-11 bit_score=74.3 identity=34.07 coverage=31.5789473684211)
seg (db=Seg db_id=seg from=14 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
ACD15_17_12

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comp(10064..11083)
DNA (1020bp) protein (340aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=60 to=317 evalue=3.3e-20 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=53 to=165 evalue=8.8e-05 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic core GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
Glyco_hydro_42 (db=HMMPfam db_id=PF02449 from=63 to=165 evalue=0.00013 interpro_id=IPR013529 interpro_description=Glycoside hydrolase, family 42, N-terminal GO=Molecular Function: beta-galactosidase activity (GO:0004565), Biological Process: carbohydrate metabolic process (GO:0005975), Cellular Component: beta-galactosidase complex (GO:0009341))
ACD15_17_13

Not on your lists

comp(11062..12012)
DNA (951bp) protein (317aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=305)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
seg (db=Seg db_id=seg from=185 to=199)
ACD15_17_14

Not on your lists

comp(12070..12633)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTP8_9CLOT (db=UNIREF evalue=4.0e-31 bit_score=137.0 identity=40.24 coverage=86.1702127659574)
hypothetical protein
DUF45 (db=HMMPfam db_id=PF01863 from=88 to=184 evalue=8.5e-36 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
DUF45 (db=HMMPfam db_id=PF01863 from=24 to=78 evalue=4.4e-06 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
ACD15_17_15

Not on your lists

comp(12626..13900)
DNA (1275bp) protein (425aa)
beta-glucosidase A (EC:3.2.1.21)
beta-glucosidase A (EC:3.2.1.21)
Beta-glucosidase A n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YCI2_DICT6 (db=UNIREF evalue=4.0e-86 bit_score=322.0 identity=40.72 coverage=95.2941176470588)
coiled-coil (db=Coil db_id=coil from=33 to=54 evalue=NA)
ACD15_17_16

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14004..14537
DNA (534bp) protein (178aa)
seg (db=Seg db_id=seg from=69 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=159 to=176)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
ACD15_17_17

Not on your lists

comp(14579..15022)
DNA (444bp) protein (148aa)
seg (db=Seg db_id=seg from=44 to=58)
Uncharacterized protein {ECO:0000313|EMBL:EKE10734.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_17_18

Not on your lists

comp(15081..15428)
DNA (348bp) protein (116aa)
rhodanese-related sulfurtransferase
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=1 to=95 evalue=1.7e-21 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=3 to=94 evalue=1.6e-16 interpro_id=IPR001763 interpro_description=Rhodanese-like)
Rhodanese (db=HMMPfam db_id=PF00581 from=9 to=96 evalue=2.8e-13 interpro_id=IPR001763 interpro_description=Rhodanese-like)
ACD15_17_19

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comp(15434..15634)
DNA (201bp) protein (67aa)
15434..15634 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE10736.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 19 items

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