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ACD15_24

Alias: ACD15_16865.34314.18

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_24_1

Not on your lists

1..723
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=3 to=32)
seg (db=Seg db_id=seg from=162 to=174)
Lysozyme-like (db=superfamily db_id=SSF53955 from=43 to=237 evalue=2.9e-13)
SLT (db=HMMPfam db_id=PF01464 from=60 to=166 evalue=9.4e-11 interpro_id=IPR008258 interpro_description=Lytic transglycosylase-like, catalytic)
ACD15_24_2

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741..1892
DNA (1152bp) protein (384aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=2 to=21)
DPP6 N-terminal domain-like (db=superfamily db_id=SSF82171 from=58 to=382 evalue=3.1e-10)
Uncharacterized protein {ECO:0000313|EMBL:EKE11564.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_3

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comp(1882..3081)
DNA (1200bp) protein (400aa)
O-antigen polymerase (db=KEGG evalue=8.0e-09 bit_score=65.1 identity=25.26 coverage=63.25)
O-antigen polymerase n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10YB8_TRIEI (db=UNIREF evalue=9.0e-09 bit_score=65.1 identity=25.26 coverage=63.25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=329)
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=361)
ACD15_24_4

Not on your lists

comp(3065..4333)
DNA (1269bp) protein (423aa)
O-antigen polymerase n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FG38_FLAJ1 (db=UNIREF evalue=2.0e-11 bit_score=74.3 identity=31.39 coverage=29.5508274231678)
O-antigen polymerase
transmembrane_regions (db=TMHMM db_id=tmhmm from=374 to=391)
transmembrane_regions (db=TMHMM db_id=tmhmm from=395 to=412)
ACD15_24_5

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comp(4336..5103)
DNA (768bp) protein (256aa)
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=150 to=163)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=253 evalue=6.7e-46)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=8 to=221 evalue=9.2e-29)
ACD15_24_6

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comp(5090..5953)
DNA (864bp) protein (288aa)
glycosyl transferase family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=268 evalue=7.2e-54)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=5 to=257 evalue=3.8e-36)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=9 to=177 evalue=5.7e-31 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD15_24_7

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comp(5969..7384)
DNA (1416bp) protein (472aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=328 to=350)
transmembrane_regions (db=TMHMM db_id=tmhmm from=357 to=376)
transmembrane_regions (db=TMHMM db_id=tmhmm from=381 to=403)
ACD15_24_8

Not on your lists

comp(7489..7977)
DNA (489bp) protein (163aa)
single-stranded nucleic acid-binding R3H domain-containing protein
seg (db=Seg db_id=seg from=2 to=20)
coiled-coil (db=Coil db_id=coil from=34 to=55 evalue=NA)
no description (db=HMMSmart db_id=SM00393 from=80 to=159 evalue=9.6e-18 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD15_24_9

Not on your lists

comp(7989..8762)
DNA (774bp) protein (258aa)
stage III sporulation protein J
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
ACD15_24_10

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comp(8775..9131)
DNA (357bp) protein (119aa)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=3 to=109 evalue=2.9e-19 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=6 to=112 evalue=8.6e-19 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=2 to=112 evalue=9.6e-14 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
rnpA: ribonuclease P protein component (db=HMMTigr db_id=TIGR00188 from=2 to=114 evalue=4.4e-13 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
ACD15_24_11

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comp(9161..9298)
DNA (138bp) protein (46aa)
seg (db=Seg db_id=seg from=32 to=41)
Ribosomal_L34 (db=HMMPfam db_id=PF00468 from=1 to=43 evalue=9.9e-19 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmH_bact: ribosomal protein L34 (db=HMMTigr db_id=TIGR01030 from=1 to=44 evalue=5.6e-14 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Q2Y5A5_9PROT_Q2Y5A5; (db=BlastProDom db_id=PD003101 from=1 to=31 evalue=0.0002 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_24_12

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9562..10938
DNA (1377bp) protein (459aa)
dnaA; chromosomal replication initiator protein DnaA
dnaA; chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein dnaA n=1 Tax=Geobacillus sp. Y412MC10 RepID=D3E718_GEOS4 (db=UNIREF evalue=1.0e-107 bit_score=394.0 identity=45.03 coverage=95.2069716775599)
seg (db=Seg db_id=seg from=95 to=114)
ACD15_24_13

Not on your lists

11211..12365
DNA (1155bp) protein (385aa)
DNA polymerase III subunit beta
seg (db=Seg db_id=seg from=215 to=230)
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=384 evalue=2.3e-77 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
no description (db=HMMSmart db_id=SM00480 from=17 to=380 evalue=3.3e-72 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD15_24_14

Not on your lists

12367..12645
DNA (279bp) protein (93aa)
seg (db=Seg db_id=seg from=22 to=36)
DUF721 (db=HMMPfam db_id=PF05258 from=43 to=92 evalue=1.9e-07 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721)
Uncharacterized protein {ECO:0000313|EMBL:EKE11576.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_15

Not on your lists

comp(12934..15477)
DNA (2544bp) protein (848aa)
hypothetical protein
hypothetical protein
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UUN3_ROSS1 (db=UNIREF evalue=7.0e-135 bit_score=485.0 identity=41.91 coverage=74.4103773584906)
coiled-coil (db=Coil db_id=coil from=720 to=741 evalue=NA)
ACD15_24_16

Not on your lists

comp(15595..16515)
DNA (921bp) protein (307aa)
hypothetical protein (db=KEGG evalue=2.0e-33 bit_score=146.0 identity=30.1 coverage=92.5081433224756)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=107 to=305 evalue=1.1e-19)
RimK (db=HMMPfam db_id=PF08443 from=106 to=280 evalue=1.8e-08 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
ATP_GRASP (db=ProfileScan db_id=PS50975 from=113 to=305 evalue=16.941 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
ACD15_24_17

Not on your lists

comp(16533..18008)
DNA (1476bp) protein (492aa)
biotin carboxylase-like protein (EC:6.4.1.2) (db=KEGG evalue=1.0e-16 bit_score=91.7 identity=20.83 coverage=79.2682926829268)
seg (db=Seg db_id=seg from=68 to=81)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=144 to=344 evalue=2.3e-11)
ATP-grasp_3 (db=HMMPfam db_id=PF02655 from=144 to=337 evalue=1.1e-08 interpro_id=IPR003806 interpro_description=ATP-grasp fold, DUF201-type)
ACD15_24_18

Not on your lists

comp(18014..18802)
DNA (789bp) protein (263aa)
18014..18802 - (rbs_motif=TAATAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11580.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_19

Not on your lists

comp(18836..19933)
DNA (1098bp) protein (366aa)
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=247 to=262)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=365 evalue=5.4e-53)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=365 evalue=7.6e-39)
ACD15_24_20

Not on your lists

comp(20003..21409)
DNA (1407bp) protein (469aa)
Alpha-L-glutamate ligase-like protein n=1 Tax=bacterium S5 RepID=D3C0C9_9BACT (db=UNIREF evalue=4.0e-67 bit_score=259.0 identity=44.55 coverage=63.5394456289979)
alpha-L-glutamate ligase-like protein
seg (db=Seg db_id=seg from=311 to=328)
rimK_rel_E_lig: alpha-L-glutamate liga (db=HMMTigr db_id=TIGR02291 from=5 to=314 evalue=2.8e-83 interpro_id=IPR011758 interpro_description=Alpha-L-glutamate ligase-related protein)
ACD15_24_21

Not on your lists

comp(21413..22069)
DNA (657bp) protein (219aa)
hypothetical protein
seg (db=Seg db_id=seg from=187 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=153 to=171)
ACD15_24_22

Not on your lists

comp(22117..22653)
DNA (537bp) protein (179aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCQ3_FUSMR (db=UNIREF evalue=9.0e-40 bit_score=166.0 identity=55.62 coverage=88.8268156424581)
seg (db=Seg db_id=seg from=157 to=167)
RUVC (db=PatternScan db_id=PS01321 from=131 to=166 evalue=0.0 interpro_id=IPR020563 interpro_description=Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site)
ACD15_24_23

Not on your lists

comp(22761..23480)
DNA (720bp) protein (240aa)
hypothetical protein
seg (db=Seg db_id=seg from=80 to=94)
DUF28 (db=HMMPfam db_id=PF01709 from=5 to=239 evalue=6.5e-83 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
YebC-like (db=superfamily db_id=SSF75625 from=3 to=239 evalue=9.8e-80 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD15_24_24

Not on your lists

23741..24721
DNA (981bp) protein (327aa)
coiled-coil (db=Coil db_id=coil from=109 to=130 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=11 to=70 evalue=2.4e-11)
TrmB (db=HMMPfam db_id=PF01978 from=17 to=65 evalue=1.5e-07 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE11586.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_25

Not on your lists

24772..24882
DNA (111bp) protein (37aa)
24772..24882 + (rbs_motif=TAA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11587.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_26

Not on your lists

comp(24905..25507)
DNA (603bp) protein (201aa)
seg (db=Seg db_id=seg from=171 to=183)
seg (db=Seg db_id=seg from=68 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
ACD15_24_27

Not on your lists

comp(25512..25736)
DNA (225bp) protein (75aa)
seg (db=Seg db_id=seg from=4 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE11589.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_28

Not on your lists

comp(25744..26787)
DNA (1044bp) protein (348aa)
Holliday junction ATP-dependent DNA helicase ruvB n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3D9_SPHTD (db=UNIREF evalue=4.0e-117 bit_score=424.0 identity=61.95 coverage=91.0919540229885)
Holliday junction DNA helicase RuvB
Holliday junction DNA helicase RuvB
ruvB: Holliday junction DNA helicase RuvB (db=HMMTigr db_id=TIGR00635 from=34 to=338 evalue=2.1e-201 interpro_id=IPR004605 interpro_description=DNA helicase, Holliday junction RuvB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
ACD15_24_29

Not on your lists

comp(27308..28423)
DNA (1116bp) protein (372aa)
coiled-coil (db=Coil db_id=coil from=340 to=361 evalue=NA)
seg (db=Seg db_id=seg from=145 to=160)
Uncharacterized protein {ECO:0000313|EMBL:EKE11558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_24_30

Not on your lists

comp(28848..31871)
DNA (3024bp) protein (1008aa)
Tfp pilus assembly protein PilB
seg (db=Seg db_id=seg from=894 to=906)
seg (db=Seg db_id=seg from=309 to=320)
seg (db=Seg db_id=seg from=2 to=20)
Displaying items 1-30 of 33 in total

View Taxonomy