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ACD9_25

Alias: ACD9_72862.8122.12

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD9_25_1

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comp(1..1128)
DNA (1128bp) protein (376aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=235 to=250)
Uncharacterized protein {ECO:0000313|EMBL:EKE18585.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD9_25_2

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comp(1163..2125)
DNA (963bp) protein (321aa)
seg (db=Seg db_id=seg from=30 to=44)
seg (db=Seg db_id=seg from=59 to=71)
seg (db=Seg db_id=seg from=103 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
May be a CRISPR locus 3275 - 3400 bp (3 repeats: TAATGTTCCACGTGGAACATTA) Jill Banfield (11/16/12)
ACD9_25_3

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3660..4331
DNA (672bp) protein (224aa)
seg (db=Seg db_id=seg from=132 to=147)
Uncharacterized protein {ECO:0000313|EMBL:EKE18587.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD9_25_4

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4370..5845
DNA (1476bp) protein (492aa)
polynucleotide adenylyltransferase
polynucleotide adenylyltransferase
PolyA polymerase n=2 Tax=Brachyspira RepID=C0R197_BRAHW (db=UNIREF evalue=9.0e-99 bit_score=364.0 identity=42.77 coverage=91.4634146341463)
seg (db=Seg db_id=seg from=470 to=487)
ACD9_25_5

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5871..6164
DNA (294bp) protein (98aa)
5871..6164 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE18589.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD9_25_6

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6424..7356
DNA (933bp) protein (311aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
PSI_RLU (db=PatternScan db_id=PS01129 from=140 to=154 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=8 to=310 evalue=3.8e-77 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=1 to=306 evalue=1.3e-75)
ACD9_25_7

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7543..8049
DNA (507bp) protein (169aa)
argB; acetylglutamate kinase (EC:2.7.2.8)
seg (db=Seg db_id=seg from=134 to=158)
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=103 to=118 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=20 to=128 evalue=1.7e-34 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 7 items

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