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ACD18_29

Alias: ACD18_215.21151.23

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_29_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(198..1163)
DNA (966bp) protein (322aa)
198..1163 - (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_29_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1344..1631)
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=3 to=17)
transmembrane_regions 5..24 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_29_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1695..2267)
DNA (573bp) protein (191aa)
PAP2 superfamily protein
Phosphoesterase, PA-phosphatase related n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLR0_9FIRM (db=UNIREF evalue=8.0e-11 bit_score=70.1 identity=34.46 coverage=73.2984293193717)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
ACD18_29_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2407..3507)
DNA (1101bp) protein (367aa)
hypothetical protein
hypothetical protein
Peptide chain release factor 2 n=2 Tax=Dehalococcoides RepID=Q3Z8Y6_DEHE1 (db=UNIREF evalue=8.0e-86 bit_score=320.0 identity=47.78 coverage=96.4577656675749)
seg (db=Seg db_id=seg from=299 to=312)
ACD18_29_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3678..5306)
DNA (1629bp) protein (543aa)
chaperonin GroL
chaperonin GroL
60 kDa chaperonin n=2 Tax=Desulfitobacterium hafniense RepID=CH60_DESHD (db=UNIREF evalue=8.0e-169 bit_score=597.0 identity=62.43 coverage=96.5009208103131)
seg (db=Seg db_id=seg from=83 to=96)
ACD18_29_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5510..5785)
DNA (276bp) protein (92aa)
chaperonin Cpn10
CHAPERONINS_CPN10 (db=PatternScan db_id=PS00681 from=3 to=27 evalue=0.0 interpro_id=IPR018369 interpro_description=Chaperonin Cpn10, conserved site GO=Molecular Function: ATP binding (GO:0005524), Biological Process: protein folding (GO:0006457))
no description (db=HMMSmart db_id=SM00883 from=2 to=90 evalue=7.2e-32 interpro_id=IPR001476 interpro_description=Chaperonin Cpn10, subgroup GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457))
GroES-like (db=superfamily db_id=SSF50129 from=1 to=91 evalue=4.0e-24 interpro_id=IPR011032 interpro_description=GroES-like)
ACD18_29_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6213..7511)
DNA (1299bp) protein (433aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=389 to=405)
transmembrane_regions (db=TMHMM db_id=tmhmm from=409 to=426)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=80 to=98)
ACD18_29_8

Not on your lists

comp(7876..8826)
DNA (951bp) protein (317aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RS70_9RHOB (db=UNIREF evalue=6.0e-11 bit_score=72.0 identity=21.34 coverage=71.2933753943218)
seg (db=Seg db_id=seg from=244 to=257)
seg (db=Seg db_id=seg from=87 to=100)
ACD18_29_9

Not on your lists

comp(8934..9710)
DNA (777bp) protein (259aa)
preprotein translocase subunit YidC
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=219)
ACD18_29_10

Not on your lists

comp(9809..11086)
DNA (1278bp) protein (426aa)
transcription termination factor NusA
coiled-coil (db=Coil db_id=coil from=391 to=412 evalue=NA)
seg (db=Seg db_id=seg from=382 to=396)
seg (db=Seg db_id=seg from=59 to=72)
ACD18_29_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11354..12526)
DNA (1173bp) protein (391aa)
ATPase AAA
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=344 to=357)
coiled-coil (db=Coil db_id=coil from=316 to=360 evalue=NA)
ACD18_29_12

Not on your lists

comp(12729..13835)
DNA (1107bp) protein (369aa)
seg (db=Seg db_id=seg from=212 to=222)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=23 to=37)
CARDB (db=HMMPfam db_id=PF07705 from=44 to=172 evalue=1.4e-06 interpro_id=IPR011635 interpro_description=APHP)
ACD18_29_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14023..15333)
DNA (1311bp) protein (437aa)
seg (db=Seg db_id=seg from=269 to=281)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
seg (db=Seg db_id=seg from=19 to=37)
CARDB (db=HMMPfam db_id=PF07705 from=43 to=182 evalue=7.3e-09 interpro_id=IPR011635 interpro_description=APHP)
ACD18_29_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15443..15826)
DNA (384bp) protein (128aa)
hypothetical protein; K07460 putative endonuclease (db=KEGG evalue=4.0e-10 bit_score=67.0 identity=38.39 coverage=80.46875)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=11 to=120 evalue=1.5e-15 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
UPF0102 (db=HMMPfam db_id=PF02021 from=13 to=108 evalue=2.2e-11 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
UPF0102 (db=HAMAP db_id=MF_00048 from=6 to=123 evalue=16.203 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
ACD18_29_15
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15833..16387)
DNA (555bp) protein (185aa)
Methyltransferase type 11
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=183 evalue=1.7e-25)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=10 to=135 evalue=1.5e-18)
2-HEPTAPRENYL-1,4-NAPHTHOQUINONE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108:SF15 from=10 to=135 evalue=1.5e-18)
ACD18_29_16
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16398..16637)
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
transmembrane_regions 2..24 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_29_17

Not on your lists

comp(16757..16993)
DNA (237bp) protein (79aa)
grxC; glutaredoxin 3
GLUTAREDOXIN_1 (db=PatternScan db_id=PS00195 from=4 to=19 evalue=0.0 interpro_id=IPR011767 interpro_description=Glutaredoxin active site GO=Molecular Function: electron carrier activity (GO:0009055), Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=2 to=78 evalue=1.4e-21 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Glutaredoxin (db=HMMPfam db_id=PF00462 from=3 to=61 evalue=1.6e-18 interpro_id=IPR002109 interpro_description=Glutaredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
ACD18_29_18

Not on your lists

comp(16998..17924)
DNA (927bp) protein (309aa)
seg (db=Seg db_id=seg from=81 to=97)
seg (db=Seg db_id=seg from=30 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=13 to=25)
ACD18_29_19

Not on your lists

comp(17972..18322)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGF3_9EURY (db=UNIREF evalue=1.0e-18 bit_score=95.1 identity=44.74 coverage=96.5811965811966)
hypothetical protein
PUA domain-like (db=superfamily db_id=SSF88697 from=1 to=116 evalue=9.0e-25 interpro_id=IPR015947 interpro_description=Pseudouridine synthase/archaeosine transglycosylase-like)
no description (db=Gene3D db_id=G3DSA:3.10.480.10 from=1 to=116 evalue=8.9e-22 interpro_id=IPR010759 interpro_description=ProFAR isomerase-like)
ACD18_29_20

Not on your lists

comp(18329..19075)
DNA (747bp) protein (249aa)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=11 to=248 evalue=2.1e-24)
Peptidase_S9 (db=HMMPfam db_id=PF00326 from=44 to=215 evalue=2.2e-10 interpro_id=IPR001375 interpro_description=Peptidase S9, prolyl oligopeptidase, catalytic domain GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=1 to=248 evalue=7.2e-09)
Uncharacterized protein {ECO:0000313|EMBL:EKE07293.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_29_21
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19148..19483)
DNA (336bp) protein (112aa)
transcriptional modulator of MazE/toxin MazF
Cell growth inhibitor/plasmid maintenance toxic component (db=superfamily db_id=SSF50118 from=1 to=110 evalue=1.3e-24 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
PemK (db=HMMPfam db_id=PF02452 from=2 to=109 evalue=1.3e-23 interpro_id=IPR003477 interpro_description=PemK-like protein GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:2.30.30.110 from=1 to=110 evalue=8.4e-23 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
MazE is an antitoxin that counteracts MazF toxin. The mazEF system causes a "programmed cell death" response to stresses including starvation and antibiotics. The antitoxin, MazE, is subject to degradation by ClpP-ClpA protease complex Jill Banfield (11/15/12)
ACD18_29_22
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19480..20223)
DNA (744bp) protein (248aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=1.0e-12 bit_score=76.6 identity=27.27 coverage=77.0161290322581)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=73 to=214 evalue=4.8e-16 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=80 to=218 evalue=4.7e-09 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
Peptidase_S24 (db=HMMPfam db_id=PF00717 from=123 to=195 evalue=5.2e-05 interpro_id=IPR019759 interpro_description=Peptidase S24/S26A/S26B, conserved region)
ACD18_29_23

Not on your lists

comp(20480..21190)
DNA (711bp) protein (237aa)
hypothetical protein
seg (db=Seg db_id=seg from=168 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=151 to=173)
Displaying 23 items

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