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RBG_16_NSX_64_22_RBG_16_scaffold_2885

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_2885_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(2..172)
DNA (171bp) protein (57aa)
guaB; inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) (EC:1.1.1.205) Tax=RBG_16_Nitrospirae_64_22_curated
guaB; inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML79_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_2885_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(258..1808)
DNA (1551bp) protein (517aa)
mechanosensitive ion channel/cyclic nucleotide-binding domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
Mechanosensitive ion channel/cyclic nucleotide-binding domain protein id=4185739 bin=GWC2_Nitrospirae-rel_56_14 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
mechanosensitive ion channel/cyclic nucleotide-binding domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(1885..2562)
DNA (678bp) protein (226aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=5048643 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
lipoprotein B
RBG_16_NSX_64_22_RBG_16_scaffold_2885_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2716..4107)
DNA (1392bp) protein (464aa)
sigma-54-dependent transcriptional response regulator Tax=RBG_16_Nitrospirae_64_22_curated
Sigma-54-dependent transcriptional response regulator id=4959207 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
sigma-54-dependent transcriptional response regulator
RBG_16_NSX_64_22_RBG_16_scaffold_2885_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4162..5295)
DNA (1134bp) protein (378aa)
histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_16_Nitrospirae_64_22_curated
Sensor histidine kinase id=2069204 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
sensor histidine kinase
RBG_16_NSX_64_22_RBG_16_scaffold_2885_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(5311..7815)
DNA (2505bp) protein (835aa)
P type cation/copper-transporter ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Tax=RBG_16_Nitrospirae_64_22_curated
Copper-(Or silver)-translocating P-type ATPase id=4543287 bin=GWA2_OP3_52_12 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
P type cation/copper-transporter ATPase
RBG_16_NSX_64_22_RBG_16_scaffold_2885_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(7812..8822)
DNA (1011bp) protein (337aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] id=14425851 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(8934..9680)
DNA (747bp) protein (249aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2885_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(9677..10978)
DNA (1302bp) protein (434aa)
DEAD/DEAH box helicase; K03732 ATP-dependent RNA helicase RhlB [EC:3.6.4.13] Tax=RBG_16_Nitrospirae_64_22_curated
DEAD/DEAH box helicase domain protein id=1841072 bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
DEAD/DEAH box helicase
RBG_16_NSX_64_22_RBG_16_scaffold_2885_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(11071..12537)
DNA (1467bp) protein (489aa)
organic solvents resistance ABC transporter periplasmic protein; K02067 putative ABC transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Mammalian cell entry related domain protein id=4127837 bin=GWF2_Nitrospirae_44_13 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
organic solvents resistance ABC transporter periplasmic protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(12697..13476)
DNA (780bp) protein (260aa)
putative ABC transporter (ATP-binding protein) Tax=RBG_16_Nitrospirae_64_22_curated
Ribonucleotide ABC transporter ATP-binding protein id=3350568 bin=GWC2_Nitrospirae_57_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
putative ABC transporter (ATP-binding protein)
RBG_16_NSX_64_22_RBG_16_scaffold_2885_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13480..14298)
DNA (819bp) protein (273aa)
organic solvents resistance ABC transporter permease; K02066 putative ABC transport system permease protein Tax=RBG_16_Nitrospirae_64_22_curated
Putative integral membrane protein id=4127835 bin=GWF2_Nitrospirae_44_13 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
organic solvents resistance ABC transporter permease
RBG_16_NSX_64_22_RBG_16_scaffold_2885_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14295..15482)
DNA (1188bp) protein (396aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RBG_16_Nitrospirae_64_22_curated
alanine racemase (EC:5.1.1.1)
Alanine racemase id=2455815 bin=GWC2_Nitrospirae-rel_56_14 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_2885_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

15694..16074
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LN71_DESBD
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

16086..16679
DNA (594bp) protein (198aa)
putative peptidase, C39 family Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=1849575 bin=GWB2_Elusimicrobium_63_22 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
putative peptidase, C39 family
RBG_16_NSX_64_22_RBG_16_scaffold_2885_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16727..18514)
DNA (1788bp) protein (596aa)
ptsI; phosphocarrier protein HPr (EC:2.7.3.9); K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] Tax=RBG_16_Nitrospirae_64_22_curated
Phosphoenolpyruvate-protein phosphotransferase id=4735634 bin=GWC2_Nitrospirae_57_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
phosphoenolpyruvate-protein phosphotransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2885_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18514..18783)
DNA (270bp) protein (90aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RQS5_ALLVD
phosphotransferase system, phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RBG_16_Nitrospirae_64_22_curated
phosphotransferase system, phosphocarrier protein HPr
RBG_16_NSX_64_22_RBG_16_scaffold_2885_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18780..19196)
DNA (417bp) protein (139aa)
pts system fructose IIA component; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] Tax=RBG_16_Nitrospirae_64_22_curated
Pts system fructose IIA component id=2084967 bin=GWD2_Nitrospirae-related_57_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
pts system fructose IIA component
RBG_16_NSX_64_22_RBG_16_scaffold_2885_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19193..20080)
DNA (888bp) protein (296aa)
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
UPF0042 nucleotide-binding protein SYNAS_12170 id=2244665 bin=GWB2_Proteobacteria_55_19 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20082..20702)
DNA (621bp) protein (207aa)
HPr kinase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RBG_16_Nitrospirae_64_22_curated
HPr kinase/phosphorylase n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CSU6_PAESJ
HPr kinase
RBG_16_NSX_64_22_RBG_16_scaffold_2885_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20644..21108)
DNA (465bp) protein (155aa)
PTS system fructose subfamily transporter subunit IIC; K02768 PTS system, fructose-specific IIA component [EC:2.7.1.69]; K02769 PTS system, fructose-specific IIB component [EC:2.7.1.69]; K02770 PTS sy
Nitrogen regulatory IIA protein id=3547881 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
PTS system fructose subfamily transporter subunit IIC
RBG_16_NSX_64_22_RBG_16_scaffold_2885_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(21399..22958)
DNA (1560bp) protein (520aa)
rpoN; RNA polymerase sigma-54 factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Nitrospirae_64_22_curated
RNA polymerase sigma-54 factor id=2455841 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
rpoN; RNA polymerase sigma-54 factor
RBG_16_NSX_64_22_RBG_16_scaffold_2885_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23123..23908)
DNA (786bp) protein (262aa)
ABC transporter, ATP-binding protein n=3 Tax=Leptospirillum RepID=J9ZCD8_LEPFM
ABC transporter ATP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
sugar ABC transporter ATP-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23922..24350)
DNA (429bp) protein (143aa)
OstA-like protein; K09774 lipopolysaccharide export system protein LptA Tax=RBG_16_Nitrospirae_64_22_curated
Lipopolysaccharide transport periplasmic protein LptA id=4810649 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
RBG_16_NSX_64_22_RBG_16_scaffold_2885_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(24437..25012)
DNA (576bp) protein (192aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=14428653 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
RBG_16_NSX_64_22_RBG_16_scaffold_2885_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25295..26149)
DNA (855bp) protein (285aa)
ABC transporter-like protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC transporter-like protein id=24470310 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(26128..26949)
DNA (822bp) protein (274aa)
cobalt transport protein Tax=RBG_16_Nitrospirae_64_22_curated
cobalt transport protein id=14426711 bin=bin1_lowGC species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
cobalt transport protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(26946..27635)
DNA (690bp) protein (230aa)
Co2+ ABC transporter permease-like protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC-type Co2+ transport system permease component-like protein id=2456060 bin=GWC2_Nitrospirae-rel_56_14 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Co2+ ABC transporter permease-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_2885_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(27846..29213)
DNA (1368bp) protein (456aa)
replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RBG_16_Nitrospirae_64_22_curated
replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase id=2056180 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RBG_16_NSX_64_22_RBG_16_scaffold_2885_30
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


comp(29267..29710)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=RL9_ANADE
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RBG_16_Nitrospirae_64_22_curated
rplI; 50S ribosomal protein L9
Displaying items 1-30 of 40 in total

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