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RBG_16_NSX_64_22_RBG_16_scaffold_4265

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_4265_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(2..112)
DNA (111bp) protein (37aa)
pyruvate ferredoxin oxidoreductase, gamma subunit (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase, gamma subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N486_9ARCH
Pyruvate ferredoxin oxidoreductase, gamma subunit Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_4265_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(1323..1739)
DNA (417bp) protein (139aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=4344949 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RBG_16_NSX_64_22_RBG_16_scaffold_4265_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(1740..2006)
DNA (267bp) protein (89aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=4344948 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RBG_16_NSX_64_22_RBG_16_scaffold_4265_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(2291..3781)
DNA (1491bp) protein (497aa)
Candidate general secretion pathway protein A n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y180_RAMTT
gspA; general secretion pathway protein A; K02450 general secretion pathway protein A Tax=RBG_16_Nitrospirae_64_22_curated
gspA; general secretion pathway protein A
RBG_16_NSX_64_22_RBG_16_scaffold_4265_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3785..4147)
DNA (363bp) protein (121aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_4265_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4166..6490)
DNA (2325bp) protein (775aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Pentapeptide repeat protein id=1739175 bin=GWB2_Geobacter-like_52_12 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

6729..7934
DNA (1206bp) protein (402aa)
leu/ile/val-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=2475303 bin=GWC2_Methylomirabilis_70_16 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid ABC transporter substrate-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8121..8990
DNA (870bp) protein (290aa)
high-affinity branched-chain amino acid transporter membrane protein Tax=RBG_16_Nitrospirae_64_22_curated
branched-chain amino acid ABC transporter, membrane protein; K01997 branched-chain amino acid transport system permease protein id=14625354 bin=bin7_NC10_sister species=Bacillus sp. ZYK genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
high-affinity branched-chain amino acid transporter membrane protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8987..9922
DNA (936bp) protein (312aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=3209648 bin=GWC2_Methylomirabilis_70_24 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
inner-membrane translocator
RBG_16_NSX_64_22_RBG_16_scaffold_4265_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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9919..10653
DNA (735bp) protein (245aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
ABC transport system protein id=2475300 bin=GWC2_Methylomirabilis_70_16 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

10685..11446
DNA (762bp) protein (254aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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11471..12118
DNA (648bp) protein (216aa)
CBS domain containing membrane protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NEI1_DESAR
hypothetical protein; K04767 acetoin utilization protein AcuB Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12231..12524
DNA (294bp) protein (98aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_4265_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12521..13282
DNA (762bp) protein (254aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Putative TPR domain protein id=1740420 bin=GWD2_Nitrospirae-related_57_8 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13314..14288
DNA (975bp) protein (325aa)
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Oligopeptide/dipeptide ABC transporter, ATPase subunit id=4830516 bin=GWC2_Nitrospirae_57_13 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
peptide ABC transporter ATP-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

14285..15283
DNA (999bp) protein (333aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PBJ4_9DELT
oligopeptide/dipeptide ABC transporter ATP-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
oligopeptide/dipeptide ABC transporter ATP-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(15341..15616)
DNA (276bp) protein (92aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_4265_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

15799..17283
DNA (1485bp) protein (495aa)
Two-component sensor kinase n=1 Tax=planctomycete KSU-1 IPR6_9PLAN">RepID=I3IPR6_9PLAN
integral membrane sensor signal transduction histidine kinase Tax=RBG_16_Nitrospirae_64_22_curated
integral membrane sensor signal transduction histidine kinase
RBG_16_NSX_64_22_RBG_16_scaffold_4265_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

17287..17760
DNA (474bp) protein (158aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_4265_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

17794..19152
DNA (1359bp) protein (453aa)
Two-component response regulator n=1 Tax=planctomycete KSU-1 IPR8_9PLAN">RepID=I3IPR8_9PLAN
sigma-54 dependent DNA-binding response regulator; K07715 two-component system, NtrC family, response regulator GlrR Tax=RBG_16_Nitrospirae_64_22_curated
sigma-54 dependent DNA-binding response regulator
RBG_16_NSX_64_22_RBG_16_scaffold_4265_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

19620..20132
DNA (513bp) protein (171aa)
Anti-sigma-factor antagonist n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q314Y5_DESDG
anti-sigma-factor antagonist Tax=RBG_16_Nitrospirae_64_22_curated
anti-sigma-factor antagonist
RBG_16_NSX_64_22_RBG_16_scaffold_4265_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20138..20542)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S886_PROA2
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20665..20865)
DNA (201bp) protein (67aa)
cold shock DNA/RNA-binding protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_16_Nitrospirae_64_22_curated
Cold-shock DNA-binding protein family id=2244465 bin=GWB2_Proteobacteria_55_19 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
cold-shock protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

21249..21917
DNA (669bp) protein (223aa)
HAD family hydrolase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RBG_16_Nitrospirae_64_22_curated
HAD family hydrolase (EC:3.1.3.18)
Phosphoglycolate phosphatase id=4022084 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
RBG_16_NSX_64_22_RBG_16_scaffold_4265_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(22039..22881)
DNA (843bp) protein (281aa)
murQ; N-acetylmuramic acid 6-phosphate etherase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein n=1 Tax=Bacillus endophyticus RepID=UPI00030E64B1
murQ; N-acetylmuramic acid 6-phosphate etherase
RBG_16_NSX_64_22_RBG_16_scaffold_4265_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23060..23344)
DNA (285bp) protein (95aa)
HD-GYP domain-containing protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YXM6_9GAMM
HD-domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
HD-domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_4265_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(24563..25795)
DNA (1233bp) protein (411aa)
TetR family transcriptional regulator Tax=RBG_16_Nitrospirae_64_22_curated
Putative transcriptional regulator, TetR family id=4478329 bin=GWF2_Nitrospirae_44_13 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
TetR family transcriptional regulator
RBG_16_NSX_64_22_RBG_16_scaffold_4265_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26065..26589
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Shewanella putrefaciens (strain 200) RepID=E6XMC7_SHEP2
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
Displaying 28 items

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