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RBG_16_NSX_64_22_RBG_16_scaffold_2378

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_2378_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(23..1438)
DNA (1416bp) protein (472aa)
aromatic hydrocarbon degradation membrane protein Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=3587208 bin=GWC2_Nitrospirae-rel_56_14 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
aromatic hydrocarbon degradation membrane protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(1746..2774)
DNA (1029bp) protein (343aa)
GAF sensor-containing diguanylate cyclase Tax=RBG_16_Nitrospirae_64_22_curated
GAF sensor-containing diguanylate cyclase id=24532287 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
GAF sensor-containing diguanylate cyclase
RBG_16_NSX_64_22_RBG_16_scaffold_2378_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2869..3723)
DNA (855bp) protein (285aa)
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LL21_HALO1
hypothetical protein; K09773 hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(3871..4119)
DNA (249bp) protein (83aa)
id=4125257 Tax=RBG_16_Nitrospirae_64_22_curated
id=4125257 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_NSX_64_22_RBG_16_scaffold_2378_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4116..5495)
DNA (1380bp) protein (460aa)
Sodium-driven efflux pump, MatE and MatE domain-containing n=2 Tax=Geobacter sulfurreducens RepID=D7AER9_GEOSK
MATE efflux family protein Tax=RBG_16_Nitrospirae_64_22_curated
norM; sodium-driven efflux pump, MatE and MatE domain-containing
RBG_16_NSX_64_22_RBG_16_scaffold_2378_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5492..6316)
DNA (825bp) protein (275aa)
Putative transmembrane transcriptional regulator (Anti-sigma factor) n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RFZ4_MOOTA
putative transmembrane transcriptional regulator (anti-sigma factor) Tax=RBG_16_Nitrospirae_64_22_curated
putative transmembrane transcriptional regulator (anti-sigma factor)
RBG_16_NSX_64_22_RBG_16_scaffold_2378_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(6325..6861)
DNA (537bp) protein (179aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFG7_THET1
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Nitrospirae_64_22_curated
ECF subfamily RNA polymerase sigma-24 subunit
RBG_16_NSX_64_22_RBG_16_scaffold_2378_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(6996..7424)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I571_CALAS
hypothetical protein; K07397 putative redox protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(7470..7961)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH06_9BACT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

8223..8789
DNA (567bp) protein (189aa)
id=14429332 Tax=RBG_16_Nitrospirae_64_22_curated
id=14429332 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
RBG_16_NSX_64_22_RBG_16_scaffold_2378_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(8811..9098)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=7201093 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(9117..9302)
DNA (186bp) protein (62aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2378_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9482..11956
DNA (2475bp) protein (825aa)
ATP-dependent protease n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SV55_9BACT
peptidase S16 lon domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
peptidase S16 lon domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12143..12844)
DNA (702bp) protein (234aa)
pseudouridine synthase (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RBG_16_Nitrospirae_64_22_curated
pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092V5_STIAD
RBG_16_NSX_64_22_RBG_16_scaffold_2378_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12937..13467)
DNA (531bp) protein (177aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RBG_16_Nitrospirae_64_22_curated
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCP4_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_2378_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13504..14577)
DNA (1074bp) protein (358aa)
rpoS; RNA polymerase, sigma S (sigma 38) factor; K03087 RNA polymerase nonessential primary-like sigma factor Tax=RBG_16_Nitrospirae_64_22_curated
RNA polymerase sigma factor id=4285480 bin=GWC2_Nitrospirae-rel_56_14 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
rpoS; RNA polymerase, sigma S (sigma 38) factor
RBG_16_NSX_64_22_RBG_16_scaffold_2378_trna_2
unknown

Not on your lists

comp(14655..14728)
DNA (74bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_2378_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14798..15841)
DNA (1044bp) protein (348aa)
response regulator receiver protein Tax=RBG_16_Nitrospirae_64_22_curated
Response regulator receiver protein id=4044262 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
response regulator receiver protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(15864..16541)
DNA (678bp) protein (226aa)
peptidase, S54 (Rhomboid) family Tax=RBG_16_Nitrospirae_64_22_curated
Putative peptidase, S54 (Rhomboid) family id=2874876 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase, S54 (Rhomboid) family
RBG_16_NSX_64_22_RBG_16_scaffold_2378_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16522..16989)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Laceyella sacchari RepID=UPI0003B514D5
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

17330..17935
DNA (606bp) protein (202aa)
hypothetical protein; K07040 uncharacterized protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein; K07040 uncharacterized protein id=12555163 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists


17916..18098
DNA (183bp) protein (61aa)
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_16_Nitrospirae_64_22_curated
50S ribosomal protein L32
50S ribosomal protein L32 id=3567763 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_2378_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

18134..19213
DNA (1080bp) protein (360aa)
plsX; fatty acid/phospholipid synthesis protein PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_16_Nitrospirae_64_22_curated
Phosphate acyltransferase id=4127757 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
plsX; fatty acid/phospholipid synthesis protein PlsX
RBG_16_NSX_64_22_RBG_16_scaffold_2378_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

19210..20217
DNA (1008bp) protein (336aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RBG_16_Nitrospirae_64_22_curated
3-oxoacyl-[acyl-carrier-protein] synthase 3 id=4127756 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
3-oxoacyl-ACP synthase
RBG_16_NSX_64_22_RBG_16_scaffold_2378_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

20365..21312
DNA (948bp) protein (316aa)
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RBG_16_Nitrospirae_64_22_curated
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0L2_DESAC
RBG_16_NSX_64_22_RBG_16_scaffold_2378_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

21396..22151
DNA (756bp) protein (252aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_16_Nitrospirae_64_22_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=3567750 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
3-oxoacyl-(acyl-carrier-protein) reductase
RBG_16_NSX_64_22_RBG_16_scaffold_2378_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

22224..22460
DNA (237bp) protein (79aa)
Acyl carrier protein n=4 Tax=Leptospirillum RepID=J9ZCK9_LEPFM
acpP; acyl carrier protein (ACP) Tax=RBG_16_Nitrospirae_64_22_curated
acyl carrier protein
RBG_16_NSX_64_22_RBG_16_scaffold_2378_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

22489..23745
DNA (1257bp) protein (419aa)
fabF2; 3-oxoacyl-ACP synthase (EC:2.3.1.179 2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RBG_16_Nitrospirae_64_22_curated
fabF2; 3-oxoacyl-ACP synthase (EC:2.3.1.179 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF7_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_2378_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

23742..24470
DNA (729bp) protein (243aa)
rnc; ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3] Tax=RBG_16_Nitrospirae_64_22_curated
Ribonuclease 3 n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E9M8_GEOBB
rnc; ribonuclease III
RBG_16_NSX_64_22_RBG_16_scaffold_2378_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

24467..25501
DNA (1035bp) protein (345aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RBG_16_Nitrospirae_64_22_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=4237230 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Displaying items 1-30 of 41 in total

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