ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_1
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

3..203
DNA (201bp) protein (67aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

172..2103
DNA (1932bp) protein (644aa)
ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein n=2 Tax=unclassified Parcubacteria RepID=UPI00037BB8D7
ATP-dependent DNA helicase PcrA
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_3
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


2182..3111
DNA (930bp) protein (310aa)
dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
dimethyladenosine transferase (EC:2.1.1.48)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000373E318
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_4
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3118..3564)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZA3_DICTD
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_5
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3561..3968)
DNA (408bp) protein (136aa)
DNA polymerase beta domain protein region n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZA2_DICTD
DNA polymerase beta domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
DNA polymerase beta domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(4363..4851)
DNA (489bp) protein (163aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_7
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(4876..5367)
DNA (492bp) protein (164aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_8
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

5713..6120
DNA (408bp) protein (136aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

6066..7091
DNA (1026bp) protein (342aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Putative uncharacterized protein id=2934212 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_10
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7088..8809
DNA (1722bp) protein (574aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
id=4731924 bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
fibronectin type III protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_11
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

8855..11140
DNA (2286bp) protein (762aa)
coiled-coil 694..715 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
coiled-coil 694..715 id=2431 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_12
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

11153..12085
DNA (933bp) protein (311aa)
seg 358..376 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
seg 358..376 id=137148 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_13
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12093..12371
DNA (279bp) protein (93aa)
id=4731921 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
id=4731921 bin=GWC2_OD1_43_27 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_14
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12376..13023
DNA (648bp) protein (216aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein cdiviTM7_00582 id=2934297 bin=GWC1_OD1_38_17 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_15
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

13143..14936
DNA (1794bp) protein (598aa)
Type IV secretory pathway VirB4 components-like protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Type IV secretory pathway VirB4 components-like protein id=2934300 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Type IV secretory pathway VirB4 components-like protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_16
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

15052..15540
DNA (489bp) protein (163aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_17
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

15544..16233
DNA (690bp) protein (230aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_18
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

16230..17021
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI000380736C
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_19
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

17049..18161
DNA (1113bp) protein (371aa)
id=2934309 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
id=2934309 bin=GWC1_OD1_38_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_20
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(18076..19407)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F2J9_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_21
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(19371..20711)
DNA (1341bp) protein (447aa)
O-antigen polymerase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
O-antigen polymerase id=8508 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_22
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(20719..22140)
DNA (1422bp) protein (474aa)
Heteropolysaccharide repeat-containing protein n=1 Tax=uncultured bacterium RepID=K2F0Q8_9BACT
polysaccharide biosynthesis protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
polysaccharide biosynthesis protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_23
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(22199..22651)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F2G7_9BACT
jag; protein Jag Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
jag; protein Jag
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_24
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(22734..23462)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FDF62
sporulation associated-membrane protein; K03217 preprotein translocase subunit YidC Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
sporulation associated-membrane protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_25
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(23469..23810)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000378939C
RNase P protein component Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RNase P protein component
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_26
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

24216..25574
DNA (1359bp) protein (453aa)
dnaA; chromosome replication initiator DnaA; K02313 chromosomal replication initiator protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
gwc:GWCH70_0001 dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein id=8515 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
dnaA; chromosome replication initiator DnaA
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_27
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

25812..26933
DNA (1122bp) protein (374aa)
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
DNA polymerase III subunit beta id=2934338 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
dnaN; DNA polymerase III subunit beta
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_28
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(26989..29619)
DNA (2631bp) protein (877aa)
1A family penicillin-binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Penicillin-binding protein, 1A family id=2934345 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
1A family penicillin-binding protein
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_29
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

29768..31642
DNA (1875bp) protein (625aa)
N-6 DNA methylase n=1 Tax=Brachyspira sp. CAG:700 RepID=R5L9W1_9SPIR
modification methylase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
modification methylase
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_2052_30
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(31632..32585)
DNA (954bp) protein (318aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
Displaying items 1-30 of 87 in total

View Taxonomy