ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2..868
DNA (867bp) protein (289aa)
Type 4 fimbrial assembly protein pilC n=1 Tax=sediment metagenome RepID=D9PFH5_9ZZZZ
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
type II secretion system F domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

872..2539
DNA (1668bp) protein (556aa)
PAS domain S-box protein (EC:2.7.13.3); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PAS domain S-box protein (EC:2.7.13.3)
Signal transduction histidine-protein kinase atoS n=1 Tax=sediment metagenome RepID=D9PFH4_9ZZZZ
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2536..3951
DNA (1416bp) protein (472aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=14625676 bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pilR; transcriptional regulatory protein pilR
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4163..4741
DNA (579bp) protein (193aa)
Membrane or secreted protein containing Prepilin-type cleavage/methylation, N-terminal domain n=1 Tax=sediment metagenome RepID=D9PMY9_9ZZZZ
pilin, type IV Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
pilin, type IV
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4859..6049
DNA (1191bp) protein (397aa)
vitamin K epoxide reductase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555539 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
vitamin K epoxide reductase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6055..7035
DNA (981bp) protein (327aa)
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein id=12555538 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
multidrug ABC transporter ATPase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7032..7838
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PLS6_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7851..8816
DNA (966bp) protein (322aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12555536 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8816..9592
DNA (777bp) protein (259aa)
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AMP0_PELPD
prepilin peptidase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9589..10845
DNA (1257bp) protein (419aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PAS/PAC sensor signal transduction histidine kinase id=3730798 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC sensor signal transduction histidine kinase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11021..11662
DNA (642bp) protein (214aa)
Pillin, putative Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Pillin, putative id=2244570 bin=GWB2_Proteobacteria_55_19 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11617..12168
DNA (552bp) protein (184aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12175..13233
DNA (1059bp) protein (353aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13249..14820
DNA (1572bp) protein (524aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14849..15982
DNA (1134bp) protein (378aa)
Methyltransferase type 11 n=1 Tax=Bacillus methanolicus MGA3 RepID=I3DU17_BACMT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16036..16890
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TK20_9DELT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17025..18095
DNA (1071bp) protein (357aa)
Glycosyl transferase, family 2 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V0M9_ROSS1
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glycosyl transferase family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18092..20647
DNA (2556bp) protein (852aa)
Glycosyl transferase family 2 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQM6_METS4
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glycosyl transferase family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_23315_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20694..21329
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YX4_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
Displaying 19 items

View Taxonomy