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gwf1_scaffold_290

Alias: WS6_GWF1_33_233_1

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_290_1
WS6_GWC1_33_20, WS6, Bacteria

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1..1698
DNA (1698bp) protein (566aa)
Polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:KKP44582.1}; EC=2.7.7.8 {ECO:0000313|EMBL:KKP44582.1};; TaxID=1619089 species="Bacteria; candidat
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TJD6_CALNY rbh
seg (db=Seg db_id=seg from=132 to=147)
gwf1_scaffold_290_2
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(1723..2751)
DNA (1029bp) protein (343aa)
RNA methylase (EC:2.1.1.29)
RNA methylase, NOL1/NOP2/sun family n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RH72_ARCPA
RNA methylase {ECO:0000313|EMBL:KKP44581.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
NOL1_NOP2_SUN (db=PatternScan db_id=PS01153 from=202 to=213 evalue=0.0 interpro_id=IPR018314 interpro_description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: methyltransferase activity (GO:0008168))
gwf1_scaffold_290_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(2751..3479)
DNA (729bp) protein (243aa)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K9Y6_HALHC
16S rRNA methyltransferase {ECO:0000313|EMBL:KKP46111.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
Ribosomal RNA small subunit methyltransferase E
(db=HMMPfam db_id=PF04452 from=16 to=237 evalue=1.7e-40 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
gwf1_scaffold_290_4

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3570..3890
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54678.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=45 to=66 evalue=NA)
gwf1_scaffold_290_5
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

3936..6758
DNA (2823bp) protein (941aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46113.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
no description (db=HMMSmart db_id=SM00060 from=41 to=121 evalue=0.083 interpro_id=IPR003961 interpro_description=Fibronectin, type III GO=Molecular Function: protein binding (GO:0005515))
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=259 to=284)
gwf1_scaffold_290_6
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

6781..8298
DNA (1518bp) protein (506aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46114.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
seg (db=Seg db_id=seg from=240 to=253)
gwf1_scaffold_290_7
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

8306..10996
DNA (2691bp) protein (897aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46115.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=631 to=653)
seg (db=Seg db_id=seg from=492 to=503)
coiled-coil (db=Coil db_id=coil from=315 to=336 evalue=NA)
gwf1_scaffold_290_8

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11018..11971
DNA (954bp) protein (318aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54672.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=9 to=27)
gwf1_scaffold_290_9

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11996..13183
DNA (1188bp) protein (396aa)
N-acetylmuramoyl-L-alanine amidase family 2 {ECO:0000313|EMBL:KKP54671.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=3 to=21)
(db=HMMPfam db_id=PF08239 from=354 to=391 evalue=2.6e-05 interpro_id=IPR013247 interpro_description=SH3, type 3)
PEPTIDOGLYCAN RECOGNITION PROTEIN (db=HMMPanther db_id=PTHR11022 from=77 to=105 evalue=5.9e-05 interpro_id=IPR015510 interpro_description=Peptidoglycan recognition protein GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
gwf1_scaffold_290_10
WS6_GWF1_33_233, WS6, Bacteria

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13267..15276
DNA (2010bp) protein (670aa)
ATP-dependent DNA helicase PcrA, DNA helicase II / ATP-dependent DNA helicase PcrA {ECO:0000313|EMBL:KKP46118.1}; EC=3.6.1.- {ECO:0000313|EMBL:KKP46118.1};; EC=3.6.4.12 {ECO:0000313|EMBL:KKP46118.1};;
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D121_HALOH rbh
seg (db=Seg db_id=seg from=77 to=91)
gwf1_scaffold_290_11
WS6_GWF1_33_233, WS6, Bacteria

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comp(15273..16208)
DNA (936bp) protein (312aa)
hypothetical protein Prhi1_06011 n=1 Tax=Peptoniphilus rhinitidis 1-13 RepID=UPI000287EB29
3D/G5 domain-containing protein {ECO:0000313|EMBL:KKP46119.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
3D/G5 domain protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwf1_scaffold_290_12
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

16294..17724
DNA (1431bp) protein (477aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46120.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=4 to=22)
TPR-like (db=superfamily db_id=SSF48452 from=50 to=335 evalue=1.8e-16)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=28 to=463 evalue=2.0e-05)
gwf1_scaffold_290_13
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

17816..19891
DNA (2076bp) protein (692aa)
Elongation factor G n=8 Tax=Caldicellulosiruptor RepID=EFG_CALBD rbh
Translation elongation factor g, elongation factor G {ECO:0000313|EMBL:KKP46121.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_2
fusA; Elongation factor G
EF-G: translation elongation factor G (db=HMMTigr db_id=TIGR00484 from=1 to=691 evalue=0.0 interpro_id=IPR004540 interpro_description=Translation elongation factor EFG/EF2 GO=Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
gwf1_scaffold_290_14
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

20034..21200
DNA (1167bp) protein (389aa)
Elongation factor Tu n=3 Tax=Desulfovibrio africanus RepID=F3YTY2_DESAF rbh
Elongation factor Tu {ECO:0000313|EMBL:KKP82518.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
translation elongation factor Tu
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=219 evalue=1.1e-58)
gwf1_scaffold_290_15

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21268..21579
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZY8_THERP
30S ribosomal protein S10 {ECO:0000313|EMBL:KKP54664.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
30S ribosomal protein S10
seg (db=Seg db_id=seg from=76 to=87)
gwf1_scaffold_290_16
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


21587..22177
DNA (591bp) protein (197aa)
50S ribosomal protein L3 n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=RL3_PROVI
50S ribosomal protein L3 {ECO:0000313|EMBL:KKP82520.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
rplC; 50S ribosomal protein L3
(db=HMMPfam db_id=PF00297 from=87 to=191 evalue=2.2e-24 interpro_id=IPR000597 interpro_description=Ribosomal protein L3 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf1_scaffold_290_17
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


22177..22782
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=1 Tax=Wigglesworthia glossinidia brevipalpis RepID=RL4_WIGBR
50S ribosomal protein L4, large subunit ribosomal protein L4 {ECO:0000313|EMBL:KKP46125.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_G
rplD; 50S ribosomal protein L4
seg (db=Seg db_id=seg from=2 to=14)
gwf1_scaffold_290_18

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22772..23065
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKI4_DESK7
50S ribosomal protein L23 {ECO:0000313|EMBL:KKP54661.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
50S ribosomal protein L25
seg (db=Seg db_id=seg from=38 to=51)
gwf1_scaffold_290_19
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


23067..23915
DNA (849bp) protein (283aa)
50S ribosomal protein L2 n=2 Tax=Thermaerobacter RepID=E6SLC8_THEM7
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFOXYB1_FULL_WS6_33_15_curated
50S ribosomal protein L2
seg (db=Seg db_id=seg from=262 to=277)
gwf1_scaffold_290_20
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists


23933..24238
DNA (306bp) protein (102aa)
30S ribosomal protein S19 n=1 Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=RS19_DESPS
30S ribosomal protein S19, small subunit ribosomal protein S19 {ECO:0000313|EMBL:KKP44562.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
rpsS; ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
gwf1_scaffold_290_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


24256..24600
DNA (345bp) protein (115aa)
50S ribosomal protein L22 n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJT2_9FIRM
50S ribosomal protein L22, large subunit ribosomal protein L22 {ECO:0000313|EMBL:KKP46129.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
50S ribosomal protein L22
no description (db=Gene3D db_id=G3DSA:3.90.470.10 from=4 to=111 evalue=1.9e-22 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf1_scaffold_290_22
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


24600..25247
DNA (648bp) protein (216aa)
30S ribosomal protein S3 n=2 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2G7_CLOCD
30S ribosomal protein S3, small subunit ribosomal protein S3 {ECO:0000313|EMBL:KKP46130.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_G
30S ribosomal protein S3
seg (db=Seg db_id=seg from=111 to=120)
gwf1_scaffold_290_23

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25267..25680
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=2 Tax=Bacillales RepID=F9DU85_9BACL
50S ribosomal protein L16 {ECO:0000313|EMBL:KKP54656.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
50S ribosomal protein L16
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf1_scaffold_290_24
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


25750..25998
DNA (249bp) protein (83aa)
30S ribosomal protein S17 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RS17_PARUW
30S ribosomal protein S17, small subunit ribosomal protein S17 {ECO:0000313|EMBL:KKP46132.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
rpsQ; 30S ribosomal protein S17
30S RIBOSOMAL PROTEIN S17 (db=HMMPanther db_id=PTHR10744:SF1 from=9 to=78 evalue=1.1e-14)
gwf1_scaffold_290_25
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


25998..26366
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=2 Tax=Anaerobaculum RepID=I4BV31_ANAMD
50S ribosomal protein L14 Tax=RIFOXYB1_FULL_WS6_33_15_curated
50S ribosomal protein L14
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
gwf1_scaffold_290_26
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


26384..26806
DNA (423bp) protein (141aa)
50S ribosomal protein L24 n=3 Tax=Hydrogenobaculum RepID=RL24_HYDS0
ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFOXYB1_FULL_WS6_33_15_curated
ribosomal protein L24
no description (db=HMMSmart db_id=SM00739 from=2 to=29 evalue=0.00012 interpro_id=IPR005824 interpro_description=KOW)
gwf1_scaffold_290_27
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


26808..27362
DNA (555bp) protein (185aa)
50S ribosomal protein L5 n=1 Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SLU6_FERBD
50S ribosomal protein L5 {ECO:0000313|EMBL:KKP82531.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
rplE; 50S ribosomal protein L5
no description (db=Gene3D db_id=G3DSA:3.30.1440.10 from=1 to=179 evalue=1.3e-61 interpro_id=IPR022803 interpro_description=Ribosomal protein L5 domain)
gwf1_scaffold_290_28
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


27346..27540
DNA (195bp) protein (65aa)
SSU ribosomal protein S14p (S29e) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AY93_9CLOT
30S ribosomal protein S14, small subunit ribosomal protein S14 {ECO:0000313|EMBL:KKP46136.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
rpsN; 30S ribosomal protein S14
seg (db=Seg db_id=seg from=5 to=21)
gwf1_scaffold_290_29

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27557..27934
DNA (378bp) protein (126aa)
30S ribosomal protein S8 n=6 Tax=Caulobacter RepID=RS8_CAUCN
30S ribosomal protein S8 {ECO:0000313|EMBL:KKP54650.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rpsH; SSU ribosomal protein S8P
seg (db=Seg db_id=seg from=46 to=57)
gwf1_scaffold_290_30

Not on your lists


27940..28482
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RL6_ALKMQ
50S ribosomal protein L6 {ECO:0000313|EMBL:KKP54649.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rplF; 50S ribosomal protein L6
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 58 in total

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