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ERMLT700_curated_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMLT700_curated_scaffold_43_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3..98
-----------------
DNA (96bp)
protein (32aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

207..1694
-----------------
DNA (1488bp)
protein (496aa)
Putative permease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A971_GEMAT
putative permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
ERMLT700_curated_scaffold_43_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

1855..4761
-----------------
DNA (2907bp)
protein (969aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12555743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
excinuclease ABC, A subunit
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

4995..5912
-----------------
DNA (918bp)
protein (306aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=12555744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5991..6254)
-----------------
DNA (264bp)
protein (88aa)
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ERMLT700_curated_scaffold_43_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6257..6598)
-----------------
DNA (342bp)
protein (114aa)
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist id=12555746 bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-sigma B factor antagonist
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_43_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6595..7209)
-----------------
DNA (615bp)
protein (205aa)
ECF subfamily RNA polymerase sigma-24 factor id=12555747 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
ERMLT700_curated_scaffold_43_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

7247..8512
-----------------
DNA (1266bp)
protein (422aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12555748 bin=CNBR_ACIDO species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate decarboxylase (EC:4.1.1.20)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

8502..9092
-----------------
DNA (591bp)
protein (197aa)
tmk; dTMP kinase (EC:2.7.4.9)
thymidylate kinase id=12555749 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9176..9547
-----------------
DNA (372bp)
protein (124aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISD1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40219.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
ERMLT700_curated_scaffold_43_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(9569..10186)
-----------------
DNA (618bp)
protein (206aa)
comF; competence protein F id=12555750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10195..10617)
-----------------
DNA (423bp)
protein (141aa)
iojap superfamily protein; K09710 ribosome-associated protein id=12555751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_13
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10604..11281)
-----------------
DNA (678bp)
protein (226aa)
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12555752 bin=CNBR_ACIDO species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_14
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11278..12366)
-----------------
DNA (1089bp)
protein (363aa)
obgE; GTPase ObgE; K03979 GTP-binding protein id=12555753 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
obgE; GTPase ObgE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


comp(12449..12706)
-----------------
DNA (258bp)
protein (86aa)
rpmA; 50S ribosomal protein L27 id=12555754 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L27
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


comp(12851..13165)
-----------------
DNA (315bp)
protein (105aa)
rplU; 50S ribosomal protein L21 id=12555755 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplU; 50S ribosomal protein L21
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_17
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(13295..14158)
-----------------
DNA (864bp)
protein (288aa)
id=12555756 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(14103..14480)
-----------------
DNA (378bp)
protein (126aa)
TPR Domain containing protein id=12555757 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
yrrB; TPR repeat-containing protein YrrB
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

14727..15752
-----------------
DNA (1026bp)
protein (342aa)
DNA protecting protein DprA n=1 Tax=Thauera sp. 63 RepID=N6Y8D2_9RHOO
Smf; Rossmann fold nucleotide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

15889..18606
-----------------
DNA (2718bp)
protein (906aa)
DNA topoisomerase 1 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZX95_9PLAN
DNA topoisomerase I
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_21
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

18708..20186
-----------------
DNA (1479bp)
protein (493aa)
hypothetical protein (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] id=12555760 bin=CNBR_ACIDO species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gid; tRNA (uracil-5-)-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_22
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

20183..21124
-----------------
DNA (942bp)
protein (314aa)
xerC; tyrosine recombinase XerC id=12555761 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tyrosine recombinase XerC
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

21308..22675
-----------------
DNA (1368bp)
protein (456aa)
Peptidase M16 domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HA05_ANADF
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM66930.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase M16 domain-containing protein
ERMLT700_curated_scaffold_43_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22675..24159
-----------------
DNA (1485bp)
protein (495aa)
peptidase M16 n=1 Tax=Pseudoalteromonas sp. PAMC 22718 RepID=UPI00031610EF
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM66929.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
metallopeptidase
ERMLT700_curated_scaffold_43_25
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(24746..26167)
-----------------
DNA (1422bp)
protein (474aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=12555762 bin=CNBR_ACIDO species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(26198..27235)
-----------------
DNA (1038bp)
protein (346aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
signal transduction histidine kinase, nitrogen specific, NtrB id=12555763 bin=CNBR_ACIDO species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ERMLT700_curated_scaffold_43_27
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(27579..29630)
-----------------
DNA (2052bp)
protein (684aa)
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 id=12555764 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(29627..30196)
-----------------
DNA (570bp)
protein (190aa)
response regulator receiver protein id=12555765 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator receiver protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ERMLT700_curated_scaffold_43_29
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

30430..31020
-----------------
DNA (591bp)
protein (197aa)
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12555766 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_43_30
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

31017..31769
-----------------
DNA (753bp)
protein (251aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying items 1-30 of 57 in total

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