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GOSHIP-P18_170_1_13_153S_1017m_2_276

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GOSHIP-P18_170_1_13_153S_1017m_2_276_1
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

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2..667
-----------------
DNA (666bp)
protein (222aa)
yrbG; sodium/calcium exchanger
K+-dependent Na+/Ca+ exchanger related-protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BKA1_9GAMM
K+-dependent Na+/Ca+ exchanger related-protein {ECO:0000313|EMBL:EAR07468.1}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_2
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

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794..1966
-----------------
DNA (1173bp)
protein (391aa)
L-carnitine dehydratase/bile acid-inducible protein F
Alpha-methylacyl-CoA racemase id=2961502 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Carnitine dehydratase {ECO:0000313|EMBL:KIE53424.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_3
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2077..2760)
-----------------
DNA (684bp)
protein (228aa)
MIP family protein
Aquaporin/glycerol uptake facilitator protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H5W9_CAUCN
MIP family protein {ECO:0000313|EMBL:AAK23483.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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3056..4408
-----------------
DNA (1353bp)
protein (451aa)
twin-arginine translocation pathway signal
ABC superfamily ATP binding cassette transporter substrate-binding protein id=4662928 bin=GWF2_Methylomirabilis_70_14 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
GOSHIP-P18_170_1_13_153S_1017m_2_276_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4514..5431
-----------------
DNA (918bp)
protein (306aa)
binding-protein dependent transport system inner membrane protein
ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6X3_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EHL96738.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5428..6330
-----------------
DNA (903bp)
protein (301aa)
binding-protein dependent transport system inner membrane protein
ABC superfamily ATP binding cassette transporter permease id=3020246 bin=GWF2_Methylomirabilis_70_14 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
GOSHIP-P18_170_1_13_153S_1017m_2_276_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6336..7424
-----------------
DNA (1089bp)
protein (363aa)
ABC transporter
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX07_RHOP2
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48350.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_8
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7529..9319)
-----------------
DNA (1791bp)
protein (597aa)
Putative long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-dependent synthetase and ligase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J2Y9_9PROT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EKE69192.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9443..11227
-----------------
DNA (1785bp)
protein (595aa)
Peptidase M3B, oligoendopeptidase-related clade 3
oligoendopeptidase F n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5A374
Oligoendopeptidase F {ECO:0000313|EMBL:KJB93705.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11231..12568
-----------------
DNA (1338bp)
protein (446aa)
aarF domain-containing kinase
AarF domain-containing kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TVY1_TISMK
AarF domain-containing kinase {ECO:0000313|EMBL:AFK56919.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_11
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12609..13154)
-----------------
DNA (546bp)
protein (182aa)
hydrolase protein
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BVR7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR20189.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_12
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13480..14685
-----------------
DNA (1206bp)
protein (402aa)
beta-ketoadipyl CoA thiolase
acetyl-CoA acetyltransferase n=1 Tax=Marinobacterium stanieri RepID=UPI000255A11C
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ERS15191.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_13
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14913..16217
-----------------
DNA (1305bp)
protein (435aa)
ferredoxin--NADP(+) reductase
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037A3B55
Ferredoxin--NADP(+) reductase {ECO:0000313|EMBL:EKV31645.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_14
unknown

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16304..16741
-----------------
DNA (438bp)
protein (146aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_276_15
RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17015..17827)
-----------------
DNA (813bp)
protein (271aa)
Putative TPR domain protein n=1 Tax=uncultured marine microorganism HF4000_008G09 RepID=B3T160_9ZZZZ
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
GOSHIP-P18_170_1_13_153S_1017m_2_276_16
RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17980..19941)
-----------------
DNA (1962bp)
protein (654aa)
Na+/solute symporter
Putative Sodium:solute symporter family protein n=1 Tax=uncultured marine microorganism HF4000_008G09 RepID=B3T162_9ZZZZ
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
GOSHIP-P18_170_1_13_153S_1017m_2_276_trna_1
unknown

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comp(20283..20356)
-----------------
DNA (74bp)
transferRNA Met
GOSHIP-P18_170_1_13_153S_1017m_2_276_17
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20478..22406)
-----------------
DNA (1929bp)
protein (643aa)
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INX9_RHOCS
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
GOSHIP-P18_170_1_13_153S_1017m_2_276_18
RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22600..24324)
-----------------
DNA (1725bp)
protein (575aa)
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GQF7_9PROT
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
GOSHIP-P18_170_1_13_153S_1017m_2_276_19
RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24325..24792)
-----------------
DNA (468bp)
protein (156aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XW25_PARAH
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
Displaying 20 items

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