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MEL_B2_2

Search features with annotation key words

Displaying items 61-90 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_2_61
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

58022..58861
DNA (840bp) protein (280aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
Uncharacterized protein {ECO:0000313|EMBL:CDC18430.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_62
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(58858..59910)
DNA (1053bp) protein (351aa)
Phosphoheptose isomerase n=2 Tax=Dictyoglomus RepID=B5YD29_DICT6 (db=UNIREF evalue=0.0 bit_score=308.0 identity=49.4 coverage=88.6039886039886)
phosphoheptose isomerase (EC:5.3.1.-) rbh
phosphoheptose isomerase (EC:5.3.1.-) rbh
gmhA: phosphoheptose isomerase (db=HMMTigr db_id=TIGR00441 from=29 to=182 evalue=3.2e-87 interpro_id=IPR004515 interpro_description=Phosphoheptose isomerase, subgroup GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: D-sedoheptulose 7-phosphate isomerase activity (GO:0008968), Biological Process: lipopolysaccharide core region biosynthetic process (GO:0009244))
MEL_B2_2_63
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(59903..61405)
DNA (1503bp) protein (501aa)
Bifunctional protein HldE n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X297_OXAFO (db=UNIREF evalue=0.0 bit_score=487.0 identity=50.1 coverage=96.00798403193613)
rfaE bifunctional protein
rfaE bifunctional protein
rfaE_dom_I: bifunctional protein RfaE, d (db=HMMTigr db_id=TIGR02198 from=6 to=327 evalue=4.6e-128 interpro_id=IPR011913 interpro_description=RfaE bifunctional protein, domain I GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773), Molecular Function: nucleotidyltransferase activity (GO:0016779))
MEL_B2_2_64
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

61511..62401
DNA (891bp) protein (297aa)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=112 to=246 evalue=4.5e-09 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
(db=HMMPfam db_id=PF01551 from=124 to=234 evalue=3.7e-08 interpro_id=IPR016047 interpro_description=Peptidase M23)
Membrane metalloendopeptidase {ECO:0000313|EMBL:CDC18415.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost
MEL_B2_2_65
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

62471..62881
DNA (411bp) protein (137aa)
peptidil-prolyl cis-trans isomerase
Peptidil-prolyl cis-trans isomerase n=3 Tax=Clostridium acetobutylicum RepID=F7ZNS6_CLOAT (db=UNIREF evalue=1.7e-24 bit_score=118.0 identity=54.2 coverage=70.07299270072993)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PPIC_PPIASE_1 (db=PatternScan db_id=PS01096 from=74 to=94 evalue=0.0 interpro_id=IPR023058 interpro_description=Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)
MEL_B2_2_66
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(63344..64204)
DNA (861bp) protein (287aa)
(db=HMMPfam db_id=PF01476 from=32 to=86 evalue=7.7e-07 interpro_id=IPR018392 interpro_description=Peptidoglycan-binding lysin domain GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
no description (db=HMMSmart db_id=SM00257 from=31 to=89 evalue=0.00023 interpro_id=IPR002482 interpro_description=Peptidoglycan-binding Lysin subgroup GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
Uncharacterized protein {ECO:0000313|EMBL:CDC18397.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_67
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

64935..65885
DNA (951bp) protein (317aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CC29_9FIRM (db=UNIREF evalue=0.0 bit_score=324.0 identity=50.7 coverage=92.74447949526814)
class V aminotransferase
class V aminotransferase
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=17 to=249 evalue=9.0e-30)
MEL_B2_2_68
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

65887..66624
DNA (738bp) protein (246aa)
Gp30 n=3 Tax=root RepID=Q6QIB9_9CAUD (db=UNIREF evalue=0.0 bit_score=287.0 identity=54.6 coverage=99.1869918699187)
BcepMu30; phage Mu F virion morphogenesis protein
(db=HMMPfam db_id=PF04233 from=53 to=183 evalue=4.0e-34 interpro_id=IPR006528 interpro_description=Phage head morphogenesis domain)
phageSPP1_gp7: phage putative head morp (db=HMMTigr db_id=TIGR01641 from=76 to=187 evalue=2.8e-11 interpro_id=IPR006528 interpro_description=Phage head morphogenesis domain)
MEL_B2_2_69
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

66669..67502
DNA (834bp) protein (278aa)
N6 adenine-specific DNA methyltransferase, D12 class n=2 Tax=Candidatus Cloacamonas acidaminovorans str. Evry RepID=B0VF61_CLOAI (db=UNIREF evalue=0.0 bit_score=270.0 identity=49.6 coverage=90.64748201438849)
DNA adenine methylase
seg (db=Seg db_id=seg from=238 to=249)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=5 to=258 evalue=3.5e-52)
MEL_B2_2_70
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

67471..67917
DNA (447bp) protein (149aa)
prophage MuMc02, virion morphogenesis protein
Prophage MuMc02, virion morphogenesis protein n=1 Tax=Methylococcus capsulatus str. Bath RepID=Q602Y2_METCA (db=UNIREF evalue=1.5e-26 bit_score=125.0 identity=42.2 coverage=98.65771812080537)
(db=HMMPfam db_id=PF05069 from=10 to=148 evalue=6.5e-37 interpro_id=IPR006522 interpro_description=Phage virion morphogensis protein)
tail_comp_S: phage virion morphogenesis p (db=HMMTigr db_id=TIGR01635 from=9 to=148 evalue=6.4e-30 interpro_id=IPR006522 interpro_description=Phage virion morphogensis protein)
MEL_B2_2_71
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

68094..69320
DNA (1227bp) protein (409aa)
68094..69320 + ( gc_cont=0.299)
Uncharacterized protein {ECO:0000313|EMBL:CDE59827.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium s
MEL_B2_2_72
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

69341..71683
DNA (2343bp) protein (781aa)
seg (db=Seg db_id=seg from=232 to=243)
seg (db=Seg db_id=seg from=614 to=625)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=534 to=742 evalue=1.8e-15)
(db=HMMPfam db_id=PF00004 from=567 to=685 evalue=4.5e-09 interpro_id=IPR003959 interpro_description=ATPase, AAA-type, core GO=Molecular Function: ATP binding (GO:0005524))
MEL_B2_2_73
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(71719..73008)
DNA (1290bp) protein (430aa)
seg (db=Seg db_id=seg from=304 to=315)
seg (db=Seg db_id=seg from=139 to=151)
seg (db=Seg db_id=seg from=119 to=129)
seg (db=Seg db_id=seg from=32 to=44)
MEL_B2_2_74
unknown

Not on your lists

comp(73017..73940)
DNA (924bp) protein (308aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=282 to=299)
transmembrane_regions (db=TMHMM db_id=tmhmm from=182 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=135)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
MEL_B2_2_75
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(73930..75369)
DNA (1440bp) protein (480aa)
serine/threonine protein kinase
seg (db=Seg db_id=seg from=20 to=33)
coiled-coil (db=Coil db_id=coil from=284 to=305 evalue=NA)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=198 to=467 evalue=2.1e-30)
MEL_B2_2_76
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

75816..77417
DNA (1602bp) protein (534aa)
hypothetical protein
seg (db=Seg db_id=seg from=111 to=124)
seg (db=Seg db_id=seg from=268 to=279)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=339 to=483 evalue=2.5e-33)
MEL_B2_2_77
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(77408..78262)
DNA (855bp) protein (285aa)
Phosphoadenosine phosphosulfate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD37_9FIRM (db=UNIREF evalue=0.0 bit_score=210.0 identity=39.5 coverage=91.9298245614035)
phosphoadenosine phosphosulfate reductase
coiled-coil (db=Coil db_id=coil from=237 to=258 evalue=NA)
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=8 to=173 evalue=1.1e-14)
MEL_B2_2_78
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(78290..79684)
DNA (1395bp) protein (465aa)
seg (db=Seg db_id=seg from=443 to=456)
seg (db=Seg db_id=seg from=330 to=342)
Uncharacterized protein {ECO:0000313|EMBL:CDE44623.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_79
unknown

Not on your lists

79939..80547
DNA (609bp) protein (203aa)
79939..80547 + ( gc_cont=0.312)
MEL_B2_2_80
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

80647..81189
DNA (543bp) protein (181aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
Uncharacterized protein {ECO:0000313|EMBL:CDC18432.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_81
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

81189..81965
DNA (777bp) protein (259aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
Uncharacterized protein {ECO:0000313|EMBL:CDC18430.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_82
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81967..82299)
DNA (333bp) protein (111aa)
XRE family transcriptional regulator
Transcriptional regulator, XRE family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9U7_DESAA (db=UNIREF evalue=2.0e-07 bit_score=61.0 identity=29.4 coverage=95.4954954954955)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=2 to=70 evalue=3.4e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=8 to=70 evalue=2.8e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_2_83
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(82339..82677)
DNA (339bp) protein (113aa)
transcriptional regulator
Transcriptional regulator n=1 Tax=Methanobrevibacter ruminantium M1 RepID=D3E070_METRM (db=UNIREF evalue=9.2e-08 bit_score=62.0 identity=33.0 coverage=76.99115044247787)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=4 to=81 evalue=5.1e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=10 to=76 evalue=5.8e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_2_84
Fusobacterium nucleatum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

82793..83860
DNA (1068bp) protein (356aa)
seg (db=Seg db_id=seg from=8 to=21)
TPR-like (db=superfamily db_id=SSF48452 from=40 to=178 evalue=1.6e-08)
HSC70-INTERACTING PROTEIN (db=HMMPanther db_id=PTHR22904:SF34 from=59 to=112 evalue=1.9e-08)
TPR REPEAT CONTAINING PROTEIN (db=HMMPanther db_id=PTHR22904 from=59 to=112 evalue=1.9e-08)
MEL_B2_2_85
unknown

Not on your lists

83890..84765
DNA (876bp) protein (292aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
MEL_B2_2_86
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

84968..85219
DNA (252bp) protein (84aa)
84968..85219 + ( gc_cont=0.294)
Uncharacterized protein {ECO:0000313|EMBL:CDC18222.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_87
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(85229..85840)
DNA (612bp) protein (204aa)
seg (db=Seg db_id=seg from=42 to=55)
seg (db=Seg db_id=seg from=65 to=86)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=96 to=203 evalue=8.2e-09 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
DIAMINE N-ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR10545 from=102 to=155 evalue=1.9e-06)
MEL_B2_2_88
MEL_A1, MEL_A1, MEL_A1, MEL_A1, Melainabacteria, Bacteria

Not on your lists

comp(85901..86137)
DNA (237bp) protein (79aa)
85901..86137 - ( gc_cont=0.262)
MEL_B2_2_89
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(86109..86420)
DNA (312bp) protein (104aa)
86109..86420 - ( gc_cont=0.234)
Uncharacterized protein {ECO:0000313|EMBL:CDC17917.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_90
unknown

Not on your lists

comp(86682..87977)
DNA (1296bp) protein (432aa)
coiled-coil (db=Coil db_id=coil from=101 to=164 evalue=NA)
seg (db=Seg db_id=seg from=127 to=138)
seg (db=Seg db_id=seg from=140 to=165)
seg (db=Seg db_id=seg from=383 to=395)
Displaying items 61-90 of 338 in total

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