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ACD20_7

Alias: ACD20_67027.59980.14

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_7_1

Not on your lists

comp(49..435)
DNA (387bp) protein (129aa)
seg (db=Seg db_id=seg from=16 to=33)
seg (db=Seg db_id=seg from=63 to=74)
Uncharacterized protein {ECO:0000313|EMBL:EKE02617.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_2

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926..2455
DNA (1530bp) protein (510aa)
hypothetical protein
hypothetical protein
UPI0001D5AC77 related cluster n=1 Tax=unknown RepID=UPI0001D5AC77 (db=UNIREF evalue=9.0e-164 bit_score=580.0 identity=58.68 coverage=93.5294117647059)
lysS_bact: lysyl-tRNA synthetase (db=HMMTigr db_id=TIGR00499 from=9 to=496 evalue=1.2e-203 interpro_id=IPR002313 interpro_description=Lysyl-tRNA synthetase, class II GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: lysine-tRNA ligase activity (GO:0004824), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: lysyl-tRNA aminoacylation (GO:0006430))
ACD20_7_3

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comp(2559..3881)
DNA (1323bp) protein (441aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L5_PELCD (db=UNIREF evalue=7.0e-97 bit_score=357.0 identity=41.76 coverage=98.8662131519274)
DUF1015 (db=HMMPfam db_id=PF06245 from=4 to=439 evalue=1.9e-118 interpro_id=IPR008323 interpro_description=Uncharacterised conserved protein UCP033563)
ACD20_7_4

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4012..5142
DNA (1131bp) protein (377aa)
nucleotidyl transferase
MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF15 from=11 to=361 evalue=1.3e-102)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=11 to=361 evalue=1.3e-102)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=302 evalue=1.1e-76)
ACD20_7_5

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comp(5361..6971)
DNA (1611bp) protein (537aa)
peptidase S1 and S6 chymotrypsin/Hap
seg (db=Seg db_id=seg from=180 to=190)
TPR-like (db=superfamily db_id=SSF48452 from=182 to=532 evalue=2.3e-51)
O-GLCNAC TRANSFERASE, P110 SUBUNIT-RELATED (db=HMMPanther db_id=PTHR23083:SF23 from=231 to=516 evalue=1.5e-48)
ACD20_7_6

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comp(7205..7852)
DNA (648bp) protein (216aa)
seg (db=Seg db_id=seg from=2 to=13)
PilZ (db=HMMPfam db_id=PF07238 from=95 to=195 evalue=6.7e-09 interpro_id=IPR009875 interpro_description=Type IV pilus assembly PilZ)
Uncharacterized protein {ECO:0000313|EMBL:EKE02579.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_7

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8381..9040
DNA (660bp) protein (220aa)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=51 to=211 evalue=6.0e-23)
no description (db=Gene3D db_id=G3DSA:3.40.390.10 from=51 to=211 evalue=9.6e-12)
Peptidase_M10 (db=HMMPfam db_id=PF00413 from=76 to=210 evalue=8.2e-11 interpro_id=IPR001818 interpro_description=Peptidase M10, metallopeptidase GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508), Molecular Function: zinc ion binding (GO:0008270), Cellular Component: extracellular matrix (GO:0031012))
MATRIX METALLOPROTEINASE (db=HMMPanther db_id=PTHR10201 from=77 to=214 evalue=7.2e-07)
ACD20_7_8

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comp(9047..9724)
DNA (678bp) protein (226aa)
peptidase M22 glycoprotease
bact_YeaZ: universal bacterial protein YeaZ (db=HMMTigr db_id=TIGR03725 from=3 to=214 evalue=1.9e-35 interpro_id=IPR022496 interpro_description=Conserved hypothetical protein CHP03725, YeaZ)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=1 to=107 evalue=3.4e-25)
Peptidase_M22 (db=HMMPfam db_id=PF00814 from=31 to=149 evalue=1.7e-22 interpro_id=IPR000905 interpro_description=Peptidase M22, glycoprotease GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
ACD20_7_9

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comp(9721..10203)
DNA (483bp) protein (161aa)
ATP/GTP hydrolase
ATP-binding protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2BYR6_LISGR (db=UNIREF evalue=6.0e-25 bit_score=116.0 identity=40.26 coverage=92.5465838509317)
UPF0079 (db=HMMPfam db_id=PF02367 from=19 to=139 evalue=4.5e-34 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
HI0065_YjeE: ATPase, YjeE family (db=HMMTigr db_id=TIGR00150 from=10 to=146 evalue=2.2e-32 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
ACD20_7_10

Not on your lists

comp(10663..10839)
DNA (177bp) protein (59aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
seg (db=Seg db_id=seg from=35 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=46)
SPW (db=HMMPfam db_id=PF03779 from=5 to=50 evalue=8.9e-14 interpro_id=IPR005530 interpro_description=SPW repeat)
ACD20_7_11

Not on your lists

11198..11983
DNA (786bp) protein (262aa)
Putative Zn-dependent protease containing TPR repeats n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGE0_9GAMM (db=UNIREF evalue=2.0e-33 bit_score=146.0 identity=33.21 coverage=86.6412213740458)
peptidase M48 Ste24p
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
OMA1 HOMOLOG, ZINC METALLOPEPTIDASE (db=HMMPanther db_id=PTHR22726 from=46 to=242 evalue=2.0e-35)
ACD20_7_12

Not on your lists

12008..12760
DNA (753bp) protein (251aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZE54_NODSP (db=UNIREF evalue=3.0e-33 bit_score=145.0 identity=44.54 coverage=90.8366533864542)
transmembrane_regions (db=TMHMM db_id=tmhmm from=229 to=248)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
ACD20_7_13

Not on your lists

12761..13504
DNA (744bp) protein (248aa)
ABC transporter
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=131 to=145 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=10 to=221 evalue=6.9e-87)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF52 from=10 to=221 evalue=6.9e-87)
ACD20_7_14

Not on your lists

13561..15150
DNA (1590bp) protein (530aa)
Mammalian cell entry related domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=474 to=495)
seg (db=Seg db_id=seg from=16 to=32)
ACD20_7_15

Not on your lists

15254..16093
DNA (840bp) protein (280aa)
seg (db=Seg db_id=seg from=2 to=16)
seg (db=Seg db_id=seg from=75 to=97)
Uncharacterized protein {ECO:0000313|EMBL:EKE02588.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_16

Not on your lists

comp(16131..17171)
DNA (1041bp) protein (347aa)
hypothetical protein
Similar to tr|Q8YYR0|Q8YYR0 n=2 Tax=Microcystis aeruginosa RepID=A8YKF5_MICAE (db=UNIREF evalue=7.0e-64 bit_score=248.0 identity=40.61 coverage=92.7953890489914)
DUF3326 (db=HMMPfam db_id=PF11805 from=15 to=345 evalue=5.1e-111 interpro_id=IPR021763 interpro_description=Protein of unknown function DUF3326)
Uncharacterized protein {ECO:0000313|EMBL:EKE02589.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_17

Not on your lists

comp(17202..17747)
DNA (546bp) protein (182aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
HGPRTase: hypoxanthine phosphoribosyltransfe (db=HMMTigr db_id=TIGR01203 from=13 to=180 evalue=5.2e-70 interpro_id=IPR005904 interpro_description=Hypoxanthine phosphoribosyl transferase GO=Molecular Function: hypoxanthine phosphoribosyltransferase activity (GO:0004422), Cellular Component: cytoplasm (GO:0005737), Biological Process: purine ribonucleoside salvage (GO:0006166))
HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22573:SF9 from=1 to=177 evalue=8.3e-57)
PHOSPHOHEXOMUTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR22573 from=1 to=177 evalue=8.3e-57)
ACD20_7_18

Not on your lists

comp(17785..19158)
DNA (1374bp) protein (458aa)
ATPase of the PP-loop superamily
seg (db=Seg db_id=seg from=138 to=150)
coiled-coil (db=Coil db_id=coil from=216 to=237 evalue=NA)
lysidine_TilS_N: tRNA(Ile)-lysidine s (db=HMMTigr db_id=TIGR02432 from=24 to=207 evalue=3.6e-67 interpro_id=IPR012795 interpro_description=Lysidine-tRNA(Ile) synthetase, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA processing (GO:0008033), Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
ACD20_7_19

Not on your lists

19282..19494
DNA (213bp) protein (71aa)
19282..19494 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02592.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_20

Not on your lists

19758..20546
DNA (789bp) protein (263aa)
MotA/TolQ/ExbB proton channel
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=3 to=19)
ACD20_7_21

Not on your lists

20577..21428
DNA (852bp) protein (284aa)
OmpA/MotB domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
OmpA-like (db=superfamily db_id=SSF103088 from=148 to=267 evalue=5.3e-28 interpro_id=IPR006665 interpro_description=Outer membrane protein, OmpA/MotB, C-terminal GO=Cellular Component: cell outer membrane (GO:0009279))
ACD20_7_22

Not on your lists

21442..22083
DNA (642bp) protein (214aa)
fliL; flagellar basal body-associated protein FliL; K02415 flagellar FliL protein (db=KEGG evalue=5.0e-10 bit_score=67.8 identity=38.1 coverage=56.5420560747664)
seg (db=Seg db_id=seg from=66 to=88)
seg (db=Seg db_id=seg from=35 to=49)
seg (db=Seg db_id=seg from=132 to=140)
ACD20_7_23

Not on your lists

22095..23147
DNA (1053bp) protein (351aa)
Flagellar motor switch protein FliM n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN28_9FIRM (db=UNIREF evalue=2.0e-69 bit_score=266.0 identity=40.79 coverage=94.5868945868946)
flagellar motor switch protein FliM
Surface presentation of antigens (SPOA) (db=superfamily db_id=SSF101801 from=268 to=347 evalue=4.7e-16 interpro_id=IPR001543 interpro_description=Surface presentation of antigen (SpoA))
fliM_switch: flagellar motor switch prote (db=HMMTigr db_id=TIGR01397 from=5 to=344 evalue=8.7e-74 interpro_id=IPR001689 interpro_description=Flagellar motor switch protein FliM GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Biological Process: chemotaxis (GO:0006935), Cellular Component: bacterial-type flagellum basal body (GO:0009425))
ACD20_7_24

Not on your lists

23181..24302
DNA (1122bp) protein (374aa)
CheC, inhibitor of MCP methylation / FliN fusion protein
seg (db=Seg db_id=seg from=255 to=265)
coiled-coil (db=Coil db_id=coil from=213 to=234 evalue=NA)
Surface presentation of antigens (SPOA) (db=superfamily db_id=SSF101801 from=289 to=373 evalue=1.3e-23 interpro_id=IPR001543 interpro_description=Surface presentation of antigen (SpoA))
ACD20_7_25

Not on your lists

comp(24709..25344)
DNA (636bp) protein (212aa)
site specific recombinase
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=28 to=207 evalue=1.5e-42 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
Phage_integrase (db=HMMPfam db_id=PF00589 from=31 to=191 evalue=4.1e-39 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=28 to=207 evalue=3.7e-37 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD20_7_26

Not on your lists

25674..25913
DNA (240bp) protein (80aa)
seg (db=Seg db_id=seg from=24 to=38)
Uncharacterized protein {ECO:0000313|EMBL:EKE02599.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_27

Not on your lists

comp(26112..26654)
DNA (543bp) protein (181aa)
putative transposase
Putative activator of late transcription n=4 Tax=Lactococcus phage ul36 RepID=A5GYP7_9CAUD (db=UNIREF evalue=2.0e-18 bit_score=95.1 identity=39.86 coverage=72.9281767955801)
seg (db=Seg db_id=seg from=99 to=112)
Uncharacterized protein {ECO:0000313|EMBL:EKE02600.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_7_28

Not on your lists

27448..28029
DNA (582bp) protein (194aa)
hypothetical protein
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=5 to=187 evalue=3.1e-30)
Methylase_S (db=HMMPfam db_id=PF01420 from=2 to=163 evalue=2.0e-16 interpro_id=IPR000055 interpro_description=Restriction endonuclease, type I, S subunit, EcoBI GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA modification (GO:0006304))
hypothetical protein alias=ACD20_C00007G00028,ACD20_67027.59980.14G0028,ACD20_67027.59980.14_28 id=17885 tax=ACD20 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_7_29

Not on your lists

28045..29550
DNA (1506bp) protein (502aa)
Type I restriction-modification system, M subunit n=1 Tax=bacterium Ellin514 RepID=B9XT15_9BACT (db=UNIREF evalue=0.0 bit_score=681.0 identity=65.86 coverage=98.406374501992)
type I restriction-modification protein subunit M
type I restriction-modification protein subunit M
coiled-coil (db=Coil db_id=coil from=469 to=497 evalue=NA)
ACD20_7_30

Not on your lists

29603..30646
DNA (1044bp) protein (348aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=D4H1I2_DENA2 (db=UNIREF evalue=3.0e-103 bit_score=378.0 identity=55.66 coverage=91.9540229885057)
seg (db=Seg db_id=seg from=325 to=347)
Displaying items 1-30 of 60 in total

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