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ACD20_19

Alias: ACD20_28221.28996.14

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_19_1

Not on your lists

comp(138..2216)
DNA (2079bp) protein (693aa)
hypothetical protein
KAP family P-loop domain-containing protein n=1 Tax=Fusobacterium sp. 3_1_27 RepID=D6LBU6_9FUSO (db=UNIREF evalue=1.0e-54 bit_score=218.0 identity=39.01 coverage=51.0822510822511)
seg (db=Seg db_id=seg from=127 to=140)
seg (db=Seg db_id=seg from=170 to=178)
ACD20_19_2

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2360..4039
DNA (1680bp) protein (560aa)
hypothetical protein VspiD_11040 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744B9E (db=UNIREF evalue=2.0e-84 bit_score=317.0 identity=39.18 coverage=79.2857142857143)
hypothetical protein (db=KEGG evalue=6.0e-12 bit_score=76.3 identity=30.05 coverage=30.7142857142857)
seg (db=Seg db_id=seg from=539 to=556)
ACD20_19_3

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4191..4427
DNA (237bp) protein (79aa)
4191..4427 + (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_19_4

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4616..5629
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFD2_CARHZ (db=UNIREF evalue=4.0e-119 bit_score=431.0 identity=66.07 coverage=97.6331360946746)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
GAPDH (db=PatternScan db_id=PS00071 from=153 to=160 evalue=0.0 interpro_id=IPR020830 interpro_description=Glyceraldehyde 3-phosphate dehydrogenase, active site)
ACD20_19_5

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5744..6529
DNA (786bp) protein (262aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
TIM_1 (db=PatternScan db_id=PS00171 from=170 to=180 evalue=0.0 interpro_id=IPR020861 interpro_description=Triosephosphate isomerase, active site)
TRIOSEPHOSPHATE ISOMERASE (db=HMMPanther db_id=PTHR21139 from=1 to=256 evalue=2.1e-100 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
Triosephosphate isomerase (TIM) (db=superfamily db_id=SSF51351 from=1 to=259 evalue=7.1e-89 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
ACD20_19_6

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6707..7372
DNA (666bp) protein (222aa)
zinc carboxypeptidase
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=3 to=200 evalue=2.5e-34)
Peptidase_M14 (db=HMMPfam db_id=PF00246 from=4 to=151 evalue=8.7e-27 interpro_id=IPR000834 interpro_description=Peptidase M14, carboxypeptidase A GO=Molecular Function: metallocarboxypeptidase activity (GO:0004181), Biological Process: proteolysis (GO:0006508), Molecular Function: zinc ion binding (GO:0008270))
no description (db=Gene3D db_id=G3DSA:3.40.630.10 from=11 to=219 evalue=3.2e-24)
ACD20_19_7

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comp(7405..8667)
DNA (1263bp) protein (421aa)
carboxyl--terminal protease
C-terminal processing peptidase subfamily n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJR8_9SYNE (db=UNIREF evalue=1.0e-77 bit_score=293.0 identity=42.2 coverage=87.6484560570071)
seg (db=Seg db_id=seg from=229 to=240)
seg (db=Seg db_id=seg from=10 to=21)
ACD20_19_8

Not on your lists

comp(8681..9535)
DNA (855bp) protein (285aa)
hypothetical protein
seg (db=Seg db_id=seg from=107 to=119)
DUF178 (db=HMMPfam db_id=PF02621 from=8 to=268 evalue=1.3e-53 interpro_id=IPR003773 interpro_description=Protein of unknown function DUF178)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=8 to=269 evalue=3.1e-37)
ACD20_19_9

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comp(9549..10682)
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q002_9BACT (db=UNIREF evalue=2.0e-107 bit_score=393.0 identity=52.76 coverage=93.3862433862434)
radical SAM domain protein
radical SAM domain protein
mena_SCO4494: putative menaquinone biosy (db=HMMTigr db_id=TIGR03700 from=18 to=374 evalue=1.6e-165 interpro_id=IPR022432 interpro_description=Menaquinone biosynthesis, SCO4494, predicted GO=Biological Process: menaquinone biosynthetic process (GO:0009234))
cytoplasmic kelly wrighton (11/15/12)
ACD20_19_10

Not on your lists

comp(10787..11509)
DNA (723bp) protein (241aa)
two-component response regulator
seg (db=Seg db_id=seg from=13 to=24)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=139 evalue=8.6e-39 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=2 to=115 evalue=2.5e-38 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_19_11

Not on your lists

comp(11525..12697)
DNA (1173bp) protein (391aa)
peptidase S1 and S6, chymotrypsin/Hap
peptidase S1 and S6, chymotrypsin/Hap
DegP2 peptidase. Serine peptidase. MEROPS family S01B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKZ0_SYNFM (db=UNIREF evalue=3.0e-91 bit_score=339.0 identity=51.06 coverage=84.1432225063939)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD20_19_12

Not on your lists

comp(12995..13141)
DNA (147bp) protein (49aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Uncharacterized protein {ECO:0000313|EMBL:EKE03617.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_19_13

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comp(13369..14469)
DNA (1101bp) protein (367aa)
Aminopeptidase protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CVX7_HALOH (db=UNIREF evalue=9.0e-102 bit_score=374.0 identity=47.22 coverage=97.8201634877384)
aminopeptidase protein (EC:3.4.11.-)
aminopeptidase protein (EC:3.4.11.-)
Peptidase_M29 (db=HMMPfam db_id=PF02073 from=2 to=364 evalue=3.1e-110 interpro_id=IPR000787 interpro_description=Peptidase M29, aminopeptidase II GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508))
ACD20_19_14

Not on your lists

14665..15813
DNA (1149bp) protein (383aa)
argD; acetylornithine aminotransferase ArgD (EC:2.6.1.11)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=28 to=376 evalue=9.2e-54 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
AMINOTRANSFERASE CLASS III (db=HMMPanther db_id=PTHR11986 from=23 to=378 evalue=2.4e-32 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACETYLORNITHINE AMINOTRANSFERASE (db=HMMPanther db_id=PTHR11986:SF19 from=23 to=378 evalue=2.4e-32 interpro_id=IPR004636 interpro_description=Acetylornithine/succinylornithine aminotransferase GO=Biological Process: arginine metabolic process (GO:0006525), Molecular Function: transaminase activity (GO:0008483))
ACD20_19_15

Not on your lists

comp(15819..16175)
DNA (357bp) protein (119aa)
seg (db=Seg db_id=seg from=9 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
ACD20_19_16

Not on your lists

16357..16659
DNA (303bp) protein (101aa)
hypothetical protein
TIGR00106: uncharacterized protein, MTH1187 (db=HMMTigr db_id=TIGR00106 from=2 to=100 evalue=1.7e-31 interpro_id=IPR002767 interpro_description=Protein of unknown function DUF77)
DUF77 (db=HMMPfam db_id=PF01910 from=4 to=97 evalue=1.0e-29 interpro_id=IPR002767 interpro_description=Protein of unknown function DUF77)
no description (db=Gene3D db_id=G3DSA:3.30.70.930 from=1 to=100 evalue=7.6e-29 interpro_id=IPR002767 interpro_description=Protein of unknown function DUF77)
ACD20_19_17

Not on your lists

comp(16661..17461)
DNA (801bp) protein (267aa)
hypothetical protein
TIGR02757: conserved hypothetical protein T (db=HMMTigr db_id=TIGR02757 from=22 to=257 evalue=1.4e-75 interpro_id=IPR014127 interpro_description=Conserved hypothetical protein CHP02757)
DUF2400 (db=HMMPfam db_id=PF09674 from=26 to=256 evalue=3.2e-75 interpro_id=IPR014127 interpro_description=Conserved hypothetical protein CHP02757)
hypothetical protein alias=ACD20_C00019G00017,ACD20_28221.28996.14G0017,ACD20_28221.28996.14_17 id=18285 tax=ACD20 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_19_18

Not on your lists

comp(17454..18023)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9K7_9FIRM (db=UNIREF evalue=3.0e-36 bit_score=154.0 identity=55.71 coverage=72.6315789473684)
tRNA specific adenosine deaminase
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=91 to=128 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
CYTOSINE DEAMINASE (db=HMMPanther db_id=PTHR11079 from=43 to=187 evalue=1.7e-50)
ACD20_19_19

Not on your lists

19021..20103
DNA (1083bp) protein (361aa)
PKD repeat protein
NHL repeat (db=superfamily db_id=SSF101898 from=6 to=294 evalue=7.0e-11)
no description (db=Gene3D db_id=G3DSA:2.120.10.30 from=35 to=191 evalue=3.2e-05 interpro_id=IPR011042 interpro_description=Six-bladed beta-propeller, TolB-like)
cellulose-binding alias=ACD20_C00019G00019,ACD20_28221.28996.14G0019,ACD20_28221.28996.14_19 id=18281 tax=ACD20 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_19_20

Not on your lists

comp(20119..21819)
DNA (1701bp) protein (567aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
seg (db=Seg db_id=seg from=249 to=265)
seg (db=Seg db_id=seg from=518 to=529)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
ACD20_19_21

Not on your lists

comp(21853..22563)
DNA (711bp) protein (237aa)
OmpR family two-component response regulator
seg (db=Seg db_id=seg from=112 to=122)
no description (db=HMMSmart db_id=SM00448 from=3 to=116 evalue=1.5e-41 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=140 evalue=3.1e-40 interpro_id=IPR011006 interpro_description=CheY-like)
ACD20_19_22

Not on your lists

22970..24148
DNA (1179bp) protein (393aa)
hypothetical protein
seg (db=Seg db_id=seg from=62 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=49 to=84 evalue=NA)
ACD20_19_23

Not on your lists

24273..26051
DNA (1779bp) protein (593aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKE03602.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_19_24

Not on your lists

26117..27028
DNA (912bp) protein (304aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=2 Tax=Synechococcus elongatus RepID=ACCD_SYNE7 (db=UNIREF evalue=4.0e-85 bit_score=318.0 identity=53.16 coverage=97.6973684210526)
acetyl-CoA carboxyl transferase
acetyl-CoA carboxyl transferase
accD: acetyl-CoA carboxylase, carboxyl trans (db=HMMTigr db_id=TIGR00515 from=1 to=292 evalue=4.9e-148 interpro_id=IPR000438 interpro_description=Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO=Molecular Function: acetyl-CoA carboxylase activity (GO:0003989), Biological Process: fatty acid biosynthetic process (GO:0006633), Cellular Component: acetyl-CoA carboxylase complex (GO:0009317))
ACD20_19_25

Not on your lists

27036..28001
DNA (966bp) protein (322aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=2 Tax=Synechococcus RepID=Q2JSS7_SYNJA (db=UNIREF evalue=3.0e-97 bit_score=358.0 identity=52.4 coverage=96.8944099378882)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
ACD20_19_26

Not on your lists

28046..28981
DNA (936bp) protein (312aa)
prmA; ribosomal protein L11 methyltransferase PrmA
PrmA (db=HMMPfam db_id=PF06325 from=11 to=310 evalue=2.8e-86 interpro_id=IPR010456 interpro_description=Ribosomal L11 methyltransferase, PrmA GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: protein amino acid methylation (GO:0006479), Molecular Function: protein methyltransferase activity (GO:0008276))
prmA: ribosomal protein L11 methyltransferas (db=HMMTigr db_id=TIGR00406 from=12 to=305 evalue=3.5e-72 interpro_id=IPR004498 interpro_description=Ribosomal protein L11 methyltransferase GO=Biological Process: protein amino acid methylation (GO:0006479), Molecular Function: protein methyltransferase activity (GO:0008276))
RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE (L11 MTASE) (db=HMMPanther db_id=PTHR18895:SF3 from=162 to=311 evalue=7.3e-44)
Displaying 26 items

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