Alias: ACD20_94322.31132.13
name | lists | location/seqs | annotations | notes |
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ACD20_30_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(1638..2870)
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Glucose-1-phosphate adenylyltransferase n=3 Tax=Anaeromyxobacter RepID=GLGC_ANAD2 (db=UNIREF evalue=5.0e-151 bit_score=537.0 identity=60.4 coverage=97.5669099756691)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
ADP_GLC_PYROPHOSPH_2 (db=PatternScan db_id=PS00809 from=97 to=105 evalue=0.0 interpro_id=IPR005836 interpro_description=ADP-glucose pyrophosphorylase, conserved site GO=Biological Process: glycogen biosynthetic process (GO:0005978))
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ACD20_30_2
uncultured bacterium, Bacteria
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Not on your lists |
comp(2876..4669)
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lepA; GTP-binding protein LepA
lepA; GTP-binding protein LepA
GTP-binding protein lepA n=1 Tax=Cyanothece sp. PCC 7425 RepID=LEPA_CYAP4 (db=UNIREF evalue=0.0 bit_score=823.0 identity=66.0 coverage=99.4983277591973)
seg (db=Seg db_id=seg from=334 to=346)
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ACD20_30_3
uncultured bacterium, Bacteria
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Not on your lists |
5183..5461
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30S ribosomal protein S20
seg (db=Seg db_id=seg from=7 to=24)
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=1 to=87 evalue=5.6e-29 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=84 evalue=1.7e-27 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_30_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(5535..5678)
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5535..5678 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02162.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(5919..7232)
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pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
seg (db=Seg db_id=seg from=140 to=157)
coiled-coil (db=Coil db_id=coil from=322 to=346 evalue=NA)
seg (db=Seg db_id=seg from=81 to=127)
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ACD20_30_6
uncultured bacterium, Bacteria
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Not on your lists |
comp(7236..8216)
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pdhB; pyruvate dehydrogenase E1 component subunit beta
pdhB; pyruvate dehydrogenase E1 component subunit beta
Dehydrogenase complex, E1 component, beta subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74AE0_GEOSL (db=UNIREF evalue=1.0e-105 bit_score=386.0 identity=60.12 coverage=99.0825688073395)
seg (db=Seg db_id=seg from=58 to=74)
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ACD20_30_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(8506..9477)
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pyruvate dehydrogenase
pyruvate dehydrogenase
Dehydrogenase complex, E1 component, alpha subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74AD3_GEOSL (db=UNIREF evalue=1.0e-94 bit_score=350.0 identity=60.58 coverage=95.9876543209877)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
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second most common annotation is transketolase. not sure if this is full pdc. E1 complex should have ~24 subunits
kelly wrighton
(11/15/12)
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ACD20_30_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(9474..9902)
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OsmC family protein n=1 Tax=Geobacter sp. M18 RepID=C6MTR3_9DELT (db=UNIREF evalue=5.0e-38 bit_score=159.0 identity=54.55 coverage=83.9160839160839)
OsmC family protein
OsmC-like (db=superfamily db_id=SSF82784 from=1 to=142 evalue=6.2e-34 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
OsmC (db=HMMPfam db_id=PF02566 from=33 to=131 evalue=6.4e-20 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
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ACD20_30_9
uncultured bacterium, Bacteria
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Not on your lists |
10442..10975
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hypothetical protein
Ferritin-like (db=superfamily db_id=SSF47240 from=3 to=128 evalue=2.4e-09 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
hypothetical protein alias=ACD20_94322.31132.13G0009,ACD20_94322.31132.13_9,ACD20_C00030G00009 id=18566 tax=ACD20 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02167.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_10
uncultured bacterium, Bacteria
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Not on your lists |
10914..11153
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10914..11153 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02168.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(12092..12547)
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coiled-coil (db=Coil db_id=coil from=122 to=143 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02138.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_12
uncultured bacterium, Bacteria
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Not on your lists |
12708..13946
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AAA ATPase
AAA ATPase
ATPase, AAA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AA20_CARHZ (db=UNIREF evalue=6.0e-103 bit_score=378.0 identity=48.57 coverage=98.7893462469734)
seg (db=Seg db_id=seg from=161 to=173)
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ACD20_30_13
uncultured bacterium, Bacteria
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Not on your lists |
14137..14718
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lexA; LexA repressor (EC:3.4.21.88)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=74 to=189 evalue=2.0e-31 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=66 to=190 evalue=8.7e-31 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=193 evalue=1.1e-24 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
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ACD20_30_14
uncultured bacterium, Bacteria
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Not on your lists |
15046..16233
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Putative RumB/ImpB like DNA repair protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWQ8_9PROT (db=UNIREF evalue=3.0e-66 bit_score=256.0 identity=37.92 coverage=96.7171717171717)
putative RumB/ImpB like DNA repair protein
seg (db=Seg db_id=seg from=219 to=234)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=7 to=240 evalue=1.0e-74)
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ACD20_30_15
uncultured bacterium, Bacteria
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Not on your lists |
16291..16512
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16291..16512 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02142.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_16
uncultured bacterium, Bacteria
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Not on your lists |
comp(16660..17631)
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4-hydroxythreonine-4-phosphate dehydrogenase
seg (db=Seg db_id=seg from=52 to=66)
pdxA: 4-hydroxythreonine-4-phosphate dehydro (db=HMMTigr db_id=TIGR00557 from=6 to=322 evalue=1.8e-137 interpro_id=IPR005255 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA GO=Biological Process: pyridoxine biosynthetic process (GO:0008615), Molecular Function: 4-hydroxythreonine-4-phosphate dehydrogenase activity (GO:0050570), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
Isocitrate/Isopropylmalate dehydrogenase-like (db=superfamily db_id=SSF53659 from=3 to=323 evalue=9.2e-88)
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ACD20_30_17
uncultured bacterium, Bacteria
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Not on your lists |
comp(17644..18951)
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hypothetical protein
YgbK-like (db=superfamily db_id=SSF142764 from=8 to=429 evalue=7.6e-88)
DUF1537 (db=HMMPfam db_id=PF07005 from=170 to=390 evalue=2.7e-31 interpro_id=IPR010737 interpro_description=Protein of unknown function, DUF1537)
Uncharacterized protein {ECO:0000313|EMBL:EKE02144.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_18
uncultured bacterium, Bacteria
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Not on your lists |
comp(18954..19289)
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single-stranded DNA-binding protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=107 evalue=2.1e-36 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=3 to=108 evalue=1.2e-30 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
SSB (db=HMMPfam db_id=PF00436 from=2 to=99 evalue=2.2e-30 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
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ACD20_30_19
uncultured bacterium, Bacteria
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Not on your lists |
comp(19355..20374)
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Galactose-1-phosphate uridylyltransferase
Galactose-1-phosphate uridylyltransferase
Galactose-1-phosphate uridylyltransferase n=6 Tax=Thermotogaceae RepID=A5IIN7_THEP1 (db=UNIREF evalue=2.0e-92 bit_score=343.0 identity=48.97 coverage=97.9411764705882)
Galactose-1-phosphate uridylyltransferase (db=HMMPIR db_id=PIRSF000808 from=1 to=339 evalue=5.3e-100 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
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ACD20_30_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(20395..21849)
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Glycogen synthase n=1 Tax=Ammonifex degensii KC4 RepID=C9RBH6_AMMDK (db=UNIREF evalue=1.0e-125 bit_score=454.0 identity=46.88 coverage=99.3814432989691)
glycogen/starch synthase
glycogen/starch synthase
glgA: glycogen/starch synthases, ADP-glucose (db=HMMTigr db_id=TIGR02095 from=1 to=481 evalue=2.7e-223 interpro_id=IPR011835 interpro_description=Glycogen/starch synthases, ADP-glucose type GO=Molecular Function: starch synthase activity (GO:0009011), Biological Process: glucan biosynthetic process (GO:0009250))
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ACD20_30_21
uncultured bacterium, Bacteria
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Not on your lists |
22214..22963
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hypothetical protein
YebC-like (db=superfamily db_id=SSF75625 from=5 to=247 evalue=5.2e-95 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
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ACD20_30_22
uncultured bacterium, Bacteria
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Not on your lists |
comp(23033..23194)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
Uncharacterized protein {ECO:0000313|EMBL:EKE02149.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_23
uncultured bacterium, Bacteria
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Not on your lists |
comp(23746..24072)
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coiled-coil (db=Coil db_id=coil from=69 to=97 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_24
uncultured bacterium, Bacteria
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Not on your lists |
comp(24106..24393)
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24106..24393 - (rbs_motif=AGGAG/GGAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02151.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_25
uncultured bacterium, Bacteria
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Not on your lists |
comp(24571..24810)
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24571..24810 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02152.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_26
uncultured bacterium, Bacteria
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Not on your lists |
comp(24829..25665)
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seg (db=Seg db_id=seg from=145 to=158)
seg (db=Seg db_id=seg from=177 to=196)
Uncharacterized protein {ECO:0000313|EMBL:EKE02153.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_27
uncultured bacterium, Bacteria
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Not on your lists |
comp(25720..26046)
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25720..26046 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02154.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_28
uncultured bacterium, Bacteria
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Not on your lists |
26386..26886
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hypothetical protein
DUF523 (db=HMMPfam db_id=PF04463 from=4 to=157 evalue=4.0e-35 interpro_id=IPR007553 interpro_description=Protein of unknown function DUF523)
protein of unknown function DUF523 alias=ACD20_94322.31132.13G0028,ACD20_94322.31132.13_28,ACD20_C00030G00028 id=18561 tax=ACD20 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02155.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_29
uncultured bacterium, Bacteria
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Not on your lists |
comp(27185..28228)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
seg (db=Seg db_id=seg from=116 to=128)
Uncharacterized protein {ECO:0000313|EMBL:EKE02156.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_30_30
uncultured bacterium, Bacteria
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Not on your lists |
comp(28268..29233)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
Uncharacterized protein {ECO:0000313|EMBL:EKE02157.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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