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ACD20_30

Alias: ACD20_94322.31132.13

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_30_1

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comp(1638..2870)
DNA (1233bp) protein (411aa)
Glucose-1-phosphate adenylyltransferase n=3 Tax=Anaeromyxobacter RepID=GLGC_ANAD2 (db=UNIREF evalue=5.0e-151 bit_score=537.0 identity=60.4 coverage=97.5669099756691)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
ADP_GLC_PYROPHOSPH_2 (db=PatternScan db_id=PS00809 from=97 to=105 evalue=0.0 interpro_id=IPR005836 interpro_description=ADP-glucose pyrophosphorylase, conserved site GO=Biological Process: glycogen biosynthetic process (GO:0005978))
ACD20_30_2

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comp(2876..4669)
DNA (1794bp) protein (598aa)
lepA; GTP-binding protein LepA
lepA; GTP-binding protein LepA
GTP-binding protein lepA n=1 Tax=Cyanothece sp. PCC 7425 RepID=LEPA_CYAP4 (db=UNIREF evalue=0.0 bit_score=823.0 identity=66.0 coverage=99.4983277591973)
seg (db=Seg db_id=seg from=334 to=346)
ACD20_30_3

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5183..5461
DNA (279bp) protein (93aa)
30S ribosomal protein S20
seg (db=Seg db_id=seg from=7 to=24)
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=1 to=87 evalue=5.6e-29 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=84 evalue=1.7e-27 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_30_4

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comp(5535..5678)
DNA (144bp) protein (48aa)
5535..5678 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02162.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_5

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comp(5919..7232)
DNA (1314bp) protein (438aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
seg (db=Seg db_id=seg from=140 to=157)
coiled-coil (db=Coil db_id=coil from=322 to=346 evalue=NA)
seg (db=Seg db_id=seg from=81 to=127)
ACD20_30_6

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comp(7236..8216)
DNA (981bp) protein (327aa)
pdhB; pyruvate dehydrogenase E1 component subunit beta
pdhB; pyruvate dehydrogenase E1 component subunit beta
Dehydrogenase complex, E1 component, beta subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74AE0_GEOSL (db=UNIREF evalue=1.0e-105 bit_score=386.0 identity=60.12 coverage=99.0825688073395)
seg (db=Seg db_id=seg from=58 to=74)
ACD20_30_7

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comp(8506..9477)
DNA (972bp) protein (324aa)
pyruvate dehydrogenase
pyruvate dehydrogenase
Dehydrogenase complex, E1 component, alpha subunit n=1 Tax=Geobacter sulfurreducens RepID=Q74AD3_GEOSL (db=UNIREF evalue=1.0e-94 bit_score=350.0 identity=60.58 coverage=95.9876543209877)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
second most common annotation is transketolase. not sure if this is full pdc. E1 complex should have ~24 subunits kelly wrighton (11/15/12)
ACD20_30_8

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comp(9474..9902)
DNA (429bp) protein (143aa)
OsmC family protein n=1 Tax=Geobacter sp. M18 RepID=C6MTR3_9DELT (db=UNIREF evalue=5.0e-38 bit_score=159.0 identity=54.55 coverage=83.9160839160839)
OsmC family protein
OsmC-like (db=superfamily db_id=SSF82784 from=1 to=142 evalue=6.2e-34 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
OsmC (db=HMMPfam db_id=PF02566 from=33 to=131 evalue=6.4e-20 interpro_id=IPR003718 interpro_description=Peroxiredoxin, OsmC-like protein GO=Biological Process: response to stress (GO:0006950))
ACD20_30_9

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10442..10975
DNA (534bp) protein (178aa)
hypothetical protein
Ferritin-like (db=superfamily db_id=SSF47240 from=3 to=128 evalue=2.4e-09 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
hypothetical protein alias=ACD20_94322.31132.13G0009,ACD20_94322.31132.13_9,ACD20_C00030G00009 id=18566 tax=ACD20 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02167.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_10

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10914..11153
DNA (240bp) protein (80aa)
10914..11153 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02168.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_11

Not on your lists

comp(12092..12547)
DNA (456bp) protein (152aa)
coiled-coil (db=Coil db_id=coil from=122 to=143 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02138.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_12

Not on your lists

12708..13946
DNA (1239bp) protein (413aa)
AAA ATPase
AAA ATPase
ATPase, AAA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AA20_CARHZ (db=UNIREF evalue=6.0e-103 bit_score=378.0 identity=48.57 coverage=98.7893462469734)
seg (db=Seg db_id=seg from=161 to=173)
ACD20_30_13

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14137..14718
DNA (582bp) protein (194aa)
lexA; LexA repressor (EC:3.4.21.88)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=74 to=189 evalue=2.0e-31 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=66 to=190 evalue=8.7e-31 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=193 evalue=1.1e-24 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD20_30_14

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15046..16233
DNA (1188bp) protein (396aa)
Putative RumB/ImpB like DNA repair protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWQ8_9PROT (db=UNIREF evalue=3.0e-66 bit_score=256.0 identity=37.92 coverage=96.7171717171717)
putative RumB/ImpB like DNA repair protein
seg (db=Seg db_id=seg from=219 to=234)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=7 to=240 evalue=1.0e-74)
ACD20_30_15

Not on your lists

16291..16512
DNA (222bp) protein (74aa)
16291..16512 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02142.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_16

Not on your lists

comp(16660..17631)
DNA (972bp) protein (324aa)
4-hydroxythreonine-4-phosphate dehydrogenase
seg (db=Seg db_id=seg from=52 to=66)
pdxA: 4-hydroxythreonine-4-phosphate dehydro (db=HMMTigr db_id=TIGR00557 from=6 to=322 evalue=1.8e-137 interpro_id=IPR005255 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA GO=Biological Process: pyridoxine biosynthetic process (GO:0008615), Molecular Function: 4-hydroxythreonine-4-phosphate dehydrogenase activity (GO:0050570), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
Isocitrate/Isopropylmalate dehydrogenase-like (db=superfamily db_id=SSF53659 from=3 to=323 evalue=9.2e-88)
ACD20_30_17

Not on your lists

comp(17644..18951)
DNA (1308bp) protein (436aa)
hypothetical protein
YgbK-like (db=superfamily db_id=SSF142764 from=8 to=429 evalue=7.6e-88)
DUF1537 (db=HMMPfam db_id=PF07005 from=170 to=390 evalue=2.7e-31 interpro_id=IPR010737 interpro_description=Protein of unknown function, DUF1537)
Uncharacterized protein {ECO:0000313|EMBL:EKE02144.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_18

Not on your lists

comp(18954..19289)
DNA (336bp) protein (112aa)
single-stranded DNA-binding protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=107 evalue=2.1e-36 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=3 to=108 evalue=1.2e-30 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
SSB (db=HMMPfam db_id=PF00436 from=2 to=99 evalue=2.2e-30 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
ACD20_30_19

Not on your lists

comp(19355..20374)
DNA (1020bp) protein (340aa)
Galactose-1-phosphate uridylyltransferase
Galactose-1-phosphate uridylyltransferase
Galactose-1-phosphate uridylyltransferase n=6 Tax=Thermotogaceae RepID=A5IIN7_THEP1 (db=UNIREF evalue=2.0e-92 bit_score=343.0 identity=48.97 coverage=97.9411764705882)
Galactose-1-phosphate uridylyltransferase (db=HMMPIR db_id=PIRSF000808 from=1 to=339 evalue=5.3e-100 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
ACD20_30_20

Not on your lists

comp(20395..21849)
DNA (1455bp) protein (485aa)
Glycogen synthase n=1 Tax=Ammonifex degensii KC4 RepID=C9RBH6_AMMDK (db=UNIREF evalue=1.0e-125 bit_score=454.0 identity=46.88 coverage=99.3814432989691)
glycogen/starch synthase
glycogen/starch synthase
glgA: glycogen/starch synthases, ADP-glucose (db=HMMTigr db_id=TIGR02095 from=1 to=481 evalue=2.7e-223 interpro_id=IPR011835 interpro_description=Glycogen/starch synthases, ADP-glucose type GO=Molecular Function: starch synthase activity (GO:0009011), Biological Process: glucan biosynthetic process (GO:0009250))
ACD20_30_21

Not on your lists

22214..22963
DNA (750bp) protein (250aa)
hypothetical protein
YebC-like (db=superfamily db_id=SSF75625 from=5 to=247 evalue=5.2e-95 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
TIGR01033: DNA-binding regulatory protein, (db=HMMTigr db_id=TIGR01033 from=1 to=239 evalue=1.3e-94 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
DUF28 (db=HMMPfam db_id=PF01709 from=5 to=239 evalue=1.0e-93 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD20_30_22

Not on your lists

comp(23033..23194)
DNA (162bp) protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
Uncharacterized protein {ECO:0000313|EMBL:EKE02149.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_23

Not on your lists

comp(23746..24072)
DNA (327bp) protein (109aa)
coiled-coil (db=Coil db_id=coil from=69 to=97 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_24

Not on your lists

comp(24106..24393)
DNA (288bp) protein (96aa)
24106..24393 - (rbs_motif=AGGAG/GGAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02151.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_25

Not on your lists

comp(24571..24810)
DNA (240bp) protein (80aa)
24571..24810 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02152.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_26

Not on your lists

comp(24829..25665)
DNA (837bp) protein (279aa)
seg (db=Seg db_id=seg from=145 to=158)
seg (db=Seg db_id=seg from=177 to=196)
Uncharacterized protein {ECO:0000313|EMBL:EKE02153.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_27

Not on your lists

comp(25720..26046)
DNA (327bp) protein (109aa)
25720..26046 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02154.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_28

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26386..26886
DNA (501bp) protein (167aa)
hypothetical protein
DUF523 (db=HMMPfam db_id=PF04463 from=4 to=157 evalue=4.0e-35 interpro_id=IPR007553 interpro_description=Protein of unknown function DUF523)
protein of unknown function DUF523 alias=ACD20_94322.31132.13G0028,ACD20_94322.31132.13_28,ACD20_C00030G00028 id=18561 tax=ACD20 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02155.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_29

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comp(27185..28228)
DNA (1044bp) protein (348aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
seg (db=Seg db_id=seg from=116 to=128)
Uncharacterized protein {ECO:0000313|EMBL:EKE02156.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_30_30

Not on your lists

comp(28268..29233)
DNA (966bp) protein (322aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
Uncharacterized protein {ECO:0000313|EMBL:EKE02157.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 31 in total

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