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ACD20_34

Alias: ACD20_1620.88547.14

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Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_34_1

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1..639
DNA (639bp) protein (213aa)
seg (db=Seg db_id=seg from=31 to=95)
coiled-coil (db=Coil db_id=coil from=183 to=211 evalue=NA)
coiled-coil (db=Coil db_id=coil from=139 to=160 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04452.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_2

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comp(681..2480)
DNA (1800bp) protein (600aa)
Tlr2283 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DGN3_THEEB (db=UNIREF evalue=0.0 bit_score=785.0 identity=63.36 coverage=97.0)
GTP-binding protein TypA/BipA
GTP-binding protein TypA/BipA
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=50 to=65 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
ACD20_34_3

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comp(2535..2885)
DNA (351bp) protein (117aa)
2535..2885 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04454.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_4

Not on your lists

3013..3660
DNA (648bp) protein (216aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=68 evalue=9.4e-11)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=10 to=33 evalue=3.8e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE04455.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_5

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comp(3667..5598)
DNA (1932bp) protein (644aa)
GAF sensor-containing diguanylate cyclase
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
no description (db=HMMSmart db_id=SM00267 from=236 to=405 evalue=1.0e-64 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=252 to=408 evalue=3.8e-56 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
ACD20_34_6

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comp(6047..6556)
DNA (510bp) protein (170aa)
seg (db=Seg db_id=seg from=73 to=85)
seg (db=Seg db_id=seg from=44 to=61)
HTH_3 (db=HMMPfam db_id=PF01381 from=100 to=148 evalue=7.0e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=88 to=155 evalue=4.4e-09 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD20_34_7

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6746..6946
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=56 to=66)
coiled-coil (db=Coil db_id=coil from=7 to=28 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04450.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_8

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comp(6996..7835)
DNA (840bp) protein (280aa)
Predicted protein n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25015 RepID=C6YT52_9GAMM (db=UNIREF evalue=5.0e-41 bit_score=171.0 identity=42.06 coverage=87.8571428571429)
seg (db=Seg db_id=seg from=135 to=146)
Uncharacterized protein {ECO:0000313|EMBL:EKE04451.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD20_34_9

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comp(8596..9660)
DNA (1065bp) protein (355aa)
3-deoxy-D-manno-octulosonic-acid transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=5 to=351 evalue=2.3e-78)
Glyco_transf_9 (db=HMMPfam db_id=PF01075 from=80 to=325 evalue=6.9e-41 interpro_id=IPR002201 interpro_description=Glycosyl transferase, family 9 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=183 to=350 evalue=2.2e-34)
ACD20_34_10

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9967..10209
DNA (243bp) protein (81aa)
coiled-coil (db=Coil db_id=coil from=6 to=27 evalue=NA)
coiled-coil (db=Coil db_id=coil from=37 to=58 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04445.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_11

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comp(10292..11035)
DNA (744bp) protein (248aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPM2_9FIRM (db=UNIREF evalue=3.0e-29 bit_score=132.0 identity=44.59 coverage=52.4193548387097)
ErfK/YbiS/YcfS/YnhG family protein
L,D-transpeptidase catalytic domain-like (db=superfamily db_id=SSF141523 from=24 to=157 evalue=1.8e-35)
YkuD (db=HMMPfam db_id=PF03734 from=28 to=156 evalue=1.4e-23 interpro_id=IPR005490 interpro_description=YkuD domain)
ACD20_34_12

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comp(11064..11642)
DNA (579bp) protein (193aa)
seg (db=Seg db_id=seg from=21 to=33)
Uncharacterized protein {ECO:0000313|EMBL:EKE04447.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_13

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comp(11813..13867)
DNA (2055bp) protein (685aa)
S-layer protein
S-layer region-like protein, putative n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C579_ACAM1 (db=UNIREF evalue=2.0e-30 bit_score=137.0 identity=39.25 coverage=25.8394160583942)
seg (db=Seg db_id=seg from=61 to=73)
seg (db=Seg db_id=seg from=174 to=185)
ACD20_34_14

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comp(14561..15070)
DNA (510bp) protein (170aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Geobacter sp. M18 RepID=C6MVE8_9DELT (db=UNIREF evalue=6.0e-10 bit_score=66.6 identity=37.78 coverage=51.7647058823529)
seg (db=Seg db_id=seg from=124 to=137)
seg (db=Seg db_id=seg from=97 to=122)
ACD20_34_15

Not on your lists

15682..17265
DNA (1584bp) protein (528aa)
LdcC2; arginine/lysine/ornithine decarboxylase
LdcC2; arginine/lysine/ornithine decarboxylase
Orn/Lys/Arg decarboxylase major region n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P966_CLOTS (db=UNIREF evalue=8.0e-91 bit_score=338.0 identity=41.51 coverage=86.5530303030303)
seg (db=Seg db_id=seg from=269 to=280)
ACD20_34_16

Not on your lists

17555..18649
DNA (1095bp) protein (365aa)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
seg (db=Seg db_id=seg from=155 to=166)
coiled-coil (db=Coil db_id=coil from=177 to=198 evalue=NA)
GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE (db=HMMPanther db_id=PTHR10937 from=1 to=364 evalue=6.6e-100)
ACD20_34_17

Not on your lists

18807..19811
DNA (1005bp) protein (335aa)
TPR repeats containing protein
seg (db=Seg db_id=seg from=103 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=9 to=21)
ACD20_34_18

Not on your lists

comp(19852..20478)
DNA (627bp) protein (209aa)
UPI00006C21E7 related cluster n=1 Tax=unknown RepID=UPI00006C21E7 (db=UNIREF evalue=2.0e-15 bit_score=85.5 identity=34.4 coverage=59.3301435406699)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=21 to=198 evalue=9.7e-32 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=65 to=197 evalue=2.9e-30)
ACD20_34_19

Not on your lists


20783..21133
DNA (351bp) protein (117aa)
rplS; 50S ribosomal protein L19
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=86 to=101 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=4 to=113 evalue=1.3e-47 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplS_bact: ribosomal protein L19 (db=HMMTigr db_id=TIGR01024 from=2 to=114 evalue=8.5e-47 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_34_20

Not on your lists

21138..21989
DNA (852bp) protein (284aa)
Ribosome biogenesis GTP-binding protein YlqF n=2 Tax=Ruminococcus RepID=D4M6T4_9FIRM (db=UNIREF evalue=7.0e-63 bit_score=244.0 identity=44.48 coverage=97.887323943662)
ribosome biogenesis GTP-binding protein YlqF
GTPase_YlqF: ribosome biogenesis GTP-bind (db=HMMTigr db_id=TIGR03596 from=4 to=278 evalue=1.5e-120 interpro_id=IPR019991 interpro_description=GTP-binding protein, ribosome biogenesis, YlqF)
Predicted GTPase, MG442 type (db=HMMPIR db_id=PIRSF006230 from=1 to=282 evalue=1.1e-103 interpro_id=IPR016478 interpro_description=GTPase, MG442, predicted)
ACD20_34_21

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21967..22620
DNA (654bp) protein (218aa)
Ribonuclease H (EC:3.1.26.4)
seg (db=Seg db_id=seg from=152 to=162)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=12 to=210 evalue=4.7e-58 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RNase_HII (db=HMMPfam db_id=PF01351 from=26 to=210 evalue=1.6e-44 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
ACD20_34_22

Not on your lists

23088..25001
DNA (1914bp) protein (638aa)
TonB-dependent outer membrane receptor for cobalamin and Fe transport
Putative TonB-dependent outer membrane receptor for cobalamin and Fe transport n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MHA1_9BACT (db=UNIREF evalue=2.0e-46 bit_score=191.0 identity=27.19 coverage=77.8996865203762)
seg (db=Seg db_id=seg from=9 to=17)
Porins (db=superfamily db_id=SSF56935 from=98 to=607 evalue=5.5e-73)
ACD20_34_23

Not on your lists

25291..26655
DNA (1365bp) protein (455aa)
Replicative DNA helicase n=1 Tax=Thermincola sp. JR RepID=D5XDQ5_9FIRM (db=UNIREF evalue=1.0e-146 bit_score=523.0 identity=59.17 coverage=94.9450549450549)
replicative DNA helicase
replicative DNA helicase
DnaB: replicative DNA helicase (db=HMMTigr db_id=TIGR00665 from=13 to=448 evalue=3.0e-274 interpro_id=IPR007692 interpro_description=DNA helicase, DnaB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD20_34_24

Not on your lists

comp(26713..26967)
DNA (255bp) protein (85aa)
seg (db=Seg db_id=seg from=13 to=24)
seg (db=Seg db_id=seg from=46 to=58)
YGGT (db=HMMPfam db_id=PF02325 from=7 to=81 evalue=1.2e-24 interpro_id=IPR003425 interpro_description=Protein of unknown function YGGT GO=Cellular Component: membrane (GO:0016020))
Uncharacterized protein {ECO:0000313|EMBL:EKE04420.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_25

Not on your lists

comp(26984..27793)
DNA (810bp) protein (270aa)
UPI0001D5AD2D related cluster n=1 Tax=unknown RepID=UPI0001D5AD2D (db=UNIREF evalue=3.0e-100 bit_score=368.0 identity=64.77 coverage=96.6666666666667)
methylthioadenosine phosphorylase (EC:2.4.2.28)
methylthioadenosine phosphorylase (EC:2.4.2.28)
METHYLTHIOADENOSINE PHOSPHORYLASE (db=HMMPanther db_id=PTHR11904:SF1 from=10 to=255 evalue=3.5e-85)
methionine salvage Jill Banfield (11/15/12)
ACD20_34_26

Not on your lists

28562..29761
DNA (1200bp) protein (400aa)
SpoIID/LytB domain-containing protein
Exopolysaccharide biosynthesis protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRE9_9FIRM (db=UNIREF evalue=3.0e-34 bit_score=149.0 identity=31.38 coverage=88.75)
seg (db=Seg db_id=seg from=8 to=26)
DUF2233 (db=HMMPfam db_id=PF09992 from=275 to=369 evalue=3.4e-11 interpro_id=IPR018711 interpro_description=Phosphodiester alpha-GlcNAcase)
ACD20_34_27

Not on your lists

comp(29851..30957)
DNA (1107bp) protein (369aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE04423.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_1620.88547.14G0027,ACD20_1620.88547.14_27,ACD20_C00034G00027 id=18706 tax=ACD20 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_34_28

Not on your lists

comp(31001..32071)
DNA (1071bp) protein (357aa)
hypothetical protein
seg (db=Seg db_id=seg from=207 to=218)
DUF2229 (db=HMMPfam db_id=PF09989 from=2 to=225 evalue=5.5e-52 interpro_id=IPR018709 interpro_description=Protein of unknown function DUF2229, CoA enzyme activase)
Uncharacterized protein {ECO:0000313|EMBL:EKE04424.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_34_29

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comp(32094..33239)
DNA (1146bp) protein (382aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDZ4_9FIRM (db=UNIREF evalue=8.0e-73 bit_score=277.0 identity=39.66 coverage=92.6701570680628)
seg (db=Seg db_id=seg from=3 to=15)
seg (db=Seg db_id=seg from=246 to=255)
ACD20_34_30

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comp(33243..33449)
DNA (207bp) protein (69aa)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=10 to=21 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=39 to=50 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=2 to=59 evalue=6.5e-16)
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=3 to=57 evalue=9.6e-11)
Displaying items 1-30 of 77 in total

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