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ACD20_106

Alias: ACD20_50631.62921.14

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_106_1

Not on your lists

comp(4..291)
DNA (288bp) protein (96aa)
4..291 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE02984.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_2

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comp(355..2145)
DNA (1791bp) protein (597aa)
pepS; aminopeptidase (EC:3.4.11.-)
Aminopeptidase PepS n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW92_9BACL (db=UNIREF evalue=4.0e-54 bit_score=216.0 identity=33.25 coverage=66.499162479062)
seg (db=Seg db_id=seg from=339 to=350)
coiled-coil (db=Coil db_id=coil from=357 to=378 evalue=NA)
ACD20_106_3

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comp(2279..3619)
DNA (1341bp) protein (447aa)
acetyl-CoA decarbonylase/synthase complex gamma subunit (EC:2.1.1.-)
acetyl-CoA decarbonylase/synthase complex gamma subunit (EC:2.1.1.-)
Similar to large subunit corrinoid FeS protein of CODH/ACS complex (AscC) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYX3_9BACT (db=UNIREF evalue=2.0e-89 bit_score=333.0 identity=39.29 coverage=98.4340044742729)
CdhD (db=HMMPfam db_id=PF03599 from=69 to=442 evalue=5.0e-77 interpro_id=IPR016041 interpro_description=CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel)
ACD20_106_4

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comp(3622..4554)
DNA (933bp) protein (311aa)
acetyl-CoA decarbonylase/synthase complex subunit delta
seg (db=Seg db_id=seg from=129 to=145)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
CdhD (db=HMMPfam db_id=PF03599 from=23 to=293 evalue=4.3e-31 interpro_id=IPR016041 interpro_description=CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel)
ACD20_106_5

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comp(4753..6063)
DNA (1311bp) protein (437aa)
Flagellar protein export ATPase FliI n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHD9_ALKOO (db=UNIREF evalue=8.0e-154 bit_score=547.0 identity=61.34 coverage=98.6270022883295)
fliI; flagellum-specific ATP synthase FliI (EC:3.6.3.14)
fliI; flagellum-specific ATP synthase FliI (EC:3.6.3.14)
ATPASE_ALPHA_BETA (db=PatternScan db_id=PS00152 from=345 to=354 evalue=0.0 interpro_id=IPR020003 interpro_description=ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO=Molecular Function: ATP binding (GO:0005524))
ACD20_106_6

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comp(6056..6856)
DNA (801bp) protein (267aa)
flagellar assembly protein FliH/type III secretion system HrpE
coiled-coil (db=Coil db_id=coil from=20 to=82 evalue=NA)
seg (db=Seg db_id=seg from=249 to=262)
seg (db=Seg db_id=seg from=43 to=61)
ACD20_106_7

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comp(6849..7874)
DNA (1026bp) protein (342aa)
fliG; flagellar motor switch protein FliG
fliG; flagellar motor switch protein FliG
Flagellar motor switch protein FliG n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN41_9FIRM (db=UNIREF evalue=5.0e-94 bit_score=348.0 identity=51.64 coverage=97.3684210526316)
seg (db=Seg db_id=seg from=177 to=192)
ACD20_106_8

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comp(7881..9431)
DNA (1551bp) protein (517aa)
flagellar M-ring protein FliF
seg (db=Seg db_id=seg from=459 to=468)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=424 to=446)
ACD20_106_9

Not on your lists

comp(9624..10115)
DNA (492bp) protein (164aa)
fliE; flagellar hook-basal body protein FliE
seg (db=Seg db_id=seg from=5 to=18)
FliE (db=HMMPfam db_id=PF02049 from=84 to=163 evalue=9.2e-24 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
fliE: flagellar hook-basal body complex prot (db=HMMTigr db_id=TIGR00205 from=55 to=163 evalue=1.0e-14 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
ACD20_106_10

Not on your lists

comp(10134..10307)
DNA (174bp) protein (58aa)
coiled-coil (db=Coil db_id=coil from=16 to=37 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02993.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_11

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comp(10329..10832)
DNA (504bp) protein (168aa)
flagellar basal-body rod protein FlgC
FLAGELLA_BB_ROD (db=PatternScan db_id=PS00588 from=12 to=32 evalue=0.0 interpro_id=IPR019776 interpro_description=Flagellar basal body rod protein, conserved site GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
FlgC: flagellar basal-body rod protein FlgC (db=HMMTigr db_id=TIGR01395 from=3 to=167 evalue=1.0e-56 interpro_id=IPR006299 interpro_description=Flagellar basal-body rod protein FlgC GO=Cellular Component: flagellum (GO:0019861))
DUF1078 (db=HMMPfam db_id=PF06429 from=129 to=167 evalue=2.9e-15 interpro_id=IPR010930 interpro_description=Protein of unknown function DUF1078, C-terminal GO=Cellular Component: flagellum (GO:0019861))
ACD20_106_12

Not on your lists

comp(10835..11290)
DNA (456bp) protein (152aa)
flagellar basal-body rod protein FlgB
Flagellar basal-body rod protein FlgB n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN45_9FIRM (db=UNIREF evalue=3.0e-13 bit_score=77.4 identity=34.21 coverage=84.8684210526316)
seg (db=Seg db_id=seg from=69 to=85)
FLAGELLA_BB_ROD (db=PatternScan db_id=PS00588 from=15 to=35 evalue=0.0 interpro_id=IPR019776 interpro_description=Flagellar basal body rod protein, conserved site GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
ACD20_106_13

Not on your lists

comp(11313..12629)
DNA (1317bp) protein (439aa)
integral membrane sensor signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=183 to=204 evalue=NA)
seg (db=Seg db_id=seg from=236 to=249)
TWO COMPONENT HISTIDINE KINASE (SPORULATION KINASE) (db=HMMPanther db_id=PTHR23283:SF24 from=153 to=438 evalue=6.6e-50)
ACD20_106_14

Not on your lists

comp(12740..13456)
DNA (717bp) protein (239aa)
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
seg (db=Seg db_id=seg from=149 to=163)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=182 to=209 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=7 to=202 evalue=3.0e-34 interpro_id=IPR011006 interpro_description=CheY-like)
ACD20_106_15

Not on your lists

comp(13991..14494)
DNA (504bp) protein (168aa)
rubrerythrin
Ferritin-like (db=superfamily db_id=SSF47240 from=37 to=166 evalue=1.7e-26 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=35 to=166 evalue=4.9e-24 interpro_id=IPR012347 interpro_description=Ferritin-related)
Rubrerythrin (db=HMMPfam db_id=PF02915 from=45 to=157 evalue=1.5e-13 interpro_id=IPR003251 interpro_description=Rubrerythrin GO=Molecular Function: metal ion binding (GO:0046872))
ACD20_106_16

Not on your lists

comp(14526..14936)
DNA (411bp) protein (137aa)
ferric uptake regulator
Similar to ferric uptake regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PX13_9BACT (db=UNIREF evalue=1.0e-28 bit_score=129.0 identity=49.28 coverage=98.5401459854015)
seg (db=Seg db_id=seg from=61 to=80)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=134 evalue=3.7e-32)
ACD20_106_17

Not on your lists

comp(15653..15871)
DNA (219bp) protein (73aa)
helix-turn-helix domain-containing protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=72 evalue=7.4e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=11 to=72 evalue=6.7e-14)
HTH_3 (db=HMMPfam db_id=PF01381 from=15 to=69 evalue=9.2e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD20_106_18

Not on your lists

15933..16154
DNA (222bp) protein (74aa)
seg (db=Seg db_id=seg from=53 to=64)
seg (db=Seg db_id=seg from=23 to=37)
coiled-coil (db=Coil db_id=coil from=21 to=49 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02978.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_19

Not on your lists

16807..18087
DNA (1281bp) protein (427aa)
arabinose efflux permease family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
ACD20_106_20

Not on your lists

comp(18077..19429)
DNA (1353bp) protein (451aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=122 to=416 evalue=1.7e-80)
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=122 to=416 evalue=7.4e-80)
nagA: N-acetylglucosamine-6-phosphate deacet (db=HMMTigr db_id=TIGR00221 from=61 to=445 evalue=5.5e-78 interpro_id=IPR003764 interpro_description=N-acetylglucosamine-6-phosphate deacetylase GO=Biological Process: N-acetylglucosamine metabolic process (GO:0006044), Molecular Function: N-acetylglucosamine-6-phosphate deacetylase activity (GO:0008448))
ACD20_106_21

Not on your lists

19754..20770
DNA (1017bp) protein (339aa)
seg (db=Seg db_id=seg from=88 to=101)
UPF0153 (db=HMMPfam db_id=PF03692 from=195 to=302 evalue=2.1e-08 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:EKE02981.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_22

Not on your lists

20857..21615
DNA (759bp) protein (253aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=220)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=194)
ACD20_106_23

Not on your lists

21720..22115
DNA (396bp) protein (132aa)
multi-sensor hybrid histidine kinase
CheY-like (db=superfamily db_id=SSF52172 from=1 to=122 evalue=2.8e-31 interpro_id=IPR011006 interpro_description=CheY-like)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=2 to=126 evalue=4.9e-31)
TWO-COMPONENT SENSOR PROTEIN HISTIDINE PROTEIN KINASE (DHKK, DHKJ) (db=HMMPanther db_id=PTHR23283:SF49 from=2 to=126 evalue=4.9e-31)
ACD20_106_24

Not on your lists

22507..22764
DNA (258bp) protein (86aa)
22507..22764 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02976.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_25

Not on your lists

comp(22930..24318)
DNA (1389bp) protein (463aa)
glucose-6-phosphate isomerase (EC:5.3.1.9)
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZD5_HALOH (db=UNIREF evalue=2.0e-112 bit_score=410.0 identity=49.22 coverage=95.8963282937365)
seg (db=Seg db_id=seg from=80 to=95)
best hit firmicute kelly wrighton (11/15/12)
ACD20_106_26

Not on your lists

comp(24331..24495)
DNA (165bp) protein (55aa)
24331..24495 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE02974.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_27

Not on your lists

comp(24512..26347)
DNA (1836bp) protein (612aa)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0BZ99_ACAM1 (db=UNIREF evalue=4.0e-175 bit_score=618.0 identity=50.24 coverage=99.6732026143791)
seg (db=Seg db_id=seg from=412 to=422)
ACD20_106_28

Not on your lists

comp(26658..27650)
DNA (993bp) protein (331aa)
seg (db=Seg db_id=seg from=80 to=126)
seg (db=Seg db_id=seg from=132 to=177)
Uncharacterized protein {ECO:0000313|EMBL:EKE02955.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_106_29

Not on your lists


comp(28032..28394)
DNA (363bp) protein (121aa)
50S ribosomal protein L20
seg (db=Seg db_id=seg from=48 to=59)
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=2.0e-68 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD20_106_30

Not on your lists


comp(28409..28618)
DNA (210bp) protein (70aa)
rpl35; 50S ribosomal protein L35
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=1.5e-28 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=2.6e-23)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=60 evalue=8.3e-23 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 60 in total

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