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ACD20_128

Alias: ACD20_7213.24407.14

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_128_1

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125..1081
DNA (957bp) protein (319aa)
ROK family glucokinase
seg (db=Seg db_id=seg from=66 to=77)
seg (db=Seg db_id=seg from=262 to=268)
ROK (db=PatternScan db_id=PS01125 from=140 to=167 evalue=0.0 interpro_id=IPR000600 interpro_description=ROK)
activtes glucose for glycolysis Actino kelly wrighton (11/15/12)
ACD20_128_2

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1360..2334
DNA (975bp) protein (325aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III, delta subunit n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W285_9CYAN (db=UNIREF evalue=7.0e-22 bit_score=108.0 identity=27.69 coverage=94.1538461538462)
seg (db=Seg db_id=seg from=89 to=100)
coiled-coil (db=Coil db_id=coil from=168 to=189 evalue=NA)
ACD20_128_3

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2340..3317
DNA (978bp) protein (326aa)
holB; DNA polymerase III, delta prime subunit (EC:2.7.7.7)
seg (db=Seg db_id=seg from=262 to=277)
seg (db=Seg db_id=seg from=125 to=137)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=263 evalue=1.8e-16)
ACD20_128_4
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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comp(3519..3731)
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=5 to=18)
seg 5..16 Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
ACD20_128_5

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comp(3771..4007)
DNA (237bp) protein (79aa)
seg (db=Seg db_id=seg from=5 to=16)
Uncharacterized protein {ECO:0000313|EMBL:EKE02484.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_128_6

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comp(4180..4506)
DNA (327bp) protein (109aa)
4180..4506 - (rbs_motif=GGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02485.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_128_7

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4835..5638
DNA (804bp) protein (268aa)
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
SIGMA70_1 (db=PatternScan db_id=PS00715 from=60 to=73 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=30 to=256 evalue=2.5e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=30 to=106 evalue=1.5e-22 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD20_128_8

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5707..6747
DNA (1041bp) protein (347aa)
type II secretion system subunit O
Peptidase A24A domain-containing protein n=1 Tax=uncultured bacterium URE12 RepID=C0JZT4_9BACT (db=UNIREF evalue=2.0e-22 bit_score=110.0 identity=33.2 coverage=63.9769452449568)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=275)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=307)
ACD20_128_9

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6889..8055
DNA (1167bp) protein (389aa)
ATP-grasp enzyme-like protein
ATP-grasp enzyme-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CVX7_METMJ (db=UNIREF evalue=1.0e-40 bit_score=170.0 identity=31.04 coverage=83.547557840617)
seg (db=Seg db_id=seg from=333 to=344)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=110 to=300 evalue=1.2e-23)
ACD20_128_10

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comp(8117..10279)
DNA (2163bp) protein (721aa)
CoA-binding protein
CoA-binding protein
Acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5Z5_UNCMA (db=UNIREF evalue=2.0e-154 bit_score=550.0 identity=45.64 coverage=95.8391123439667)
seg (db=Seg db_id=seg from=259 to=272)
formation of acetate, analagous to pt-ack two steps, from acetyl CoA kelly wrighton (11/15/12)
ACD20_128_11

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comp(10483..11121)
DNA (639bp) protein (213aa)
radical SAM protein
seg (db=Seg db_id=seg from=50 to=65)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=15 to=201 evalue=7.3e-15)
Radical_SAM (db=HMMPfam db_id=PF04055 from=19 to=145 evalue=9.2e-12 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_128_12

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comp(11376..12458)
DNA (1083bp) protein (361aa)
riboflavin biosynthesis protein
riboflavin biosynthesis protein
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VN98_CLOBO (db=UNIREF evalue=4.0e-91 bit_score=338.0 identity=47.93 coverage=98.3379501385042)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=54 to=92 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
ACD20_128_13

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12460..13143
DNA (684bp) protein (228aa)
dephospho-CoA kinase (EC:2.7.1.24)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=28 to=227 evalue=3.8e-57)
CoaE (db=HMMPfam db_id=PF01121 from=34 to=212 evalue=5.7e-48 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
TIGR00152: dephospho-CoA kinase (db=HMMTigr db_id=TIGR00152 from=33 to=221 evalue=6.8e-46 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
ACD20_128_14

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13229..13810
DNA (582bp) protein (194aa)
trpG; anthranilate synthase component II
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=3 to=192 evalue=1.9e-95)
trpG_papA: glutamine amidotransferase of a (db=HMMTigr db_id=TIGR00566 from=3 to=192 evalue=6.7e-88 interpro_id=IPR006221 interpro_description=Anthranilate synthase, glutamine amidotransferase domain GO=Molecular Function: anthranilate synthase activity (GO:0004049), Biological Process: metabolic process (GO:0008152))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=1 to=192 evalue=3.4e-60)
ACD20_128_15

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13824..14828
DNA (1005bp) protein (335aa)
anthranilate phosphoribosyltransferase
seg (db=Seg db_id=seg from=92 to=103)
trpD: anthranilate phosphoribosyltransferase (db=HMMTigr db_id=TIGR01245 from=6 to=334 evalue=1.3e-149 interpro_id=IPR005940 interpro_description=Anthranilate phosphoribosyl transferase GO=Biological Process: tryptophan biosynthetic process (GO:0000162), Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048))
Glycos_transf_3 (db=HMMPfam db_id=PF00591 from=75 to=326 evalue=1.6e-86 interpro_id=IPR000312 interpro_description=Glycosyl transferase, family 3 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757))
ACD20_128_16

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comp(14875..16569)
DNA (1695bp) protein (565aa)
alpha-glucan phosphorylase (EC:2.4.1.1)
alpha-glucan phosphorylase (EC:2.4.1.1)
Glycogen/starch/alpha-glucan phosphorylase n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3J5_NITSB (db=UNIREF evalue=6.0e-141 bit_score=504.0 identity=49.53 coverage=92.7433628318584)
more_P_ylases: alpha-glucan phosphoryla (db=HMMTigr db_id=TIGR02094 from=8 to=533 evalue=6.8e-146 interpro_id=IPR011834 interpro_description=Alpha-glucan phosphorylase GO=Molecular Function: phosphorylase activity (GO:0004645), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD20_128_17

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comp(16973..17902)
DNA (930bp) protein (310aa)
Ornithine carbamoyltransferase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH81_9FIRM (db=UNIREF evalue=1.0e-102 bit_score=376.0 identity=58.31 coverage=98.7096774193548)
argF; ornithine carbamoyltransferase
argF; ornithine carbamoyltransferase
orni_carb_tr: ornithine carbamoyltransfe (db=HMMTigr db_id=TIGR00658 from=6 to=309 evalue=1.6e-179 interpro_id=IPR002292 interpro_description=Ornithine carbamoyltransferase GO=Molecular Function: ornithine carbamoyltransferase activity (GO:0004585), Biological Process: cellular amino acid metabolic process (GO:0006520), Cellular Component: ornithine carbamoyltransferase complex (GO:0009348))
ACD20_128_18

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comp(18426..18596)
DNA (171bp) protein (57aa)
18426..18596 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02474.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_128_19

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18690..19499
DNA (810bp) protein (270aa)
cof family hydrolase
COF_2 (db=PatternScan db_id=PS01229 from=217 to=239 evalue=0.0 interpro_id=IPR000150 interpro_description=Cof protein GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
COF_1 (db=PatternScan db_id=PS01228 from=7 to=18 evalue=0.0 interpro_id=IPR000150 interpro_description=Cof protein GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
HAD-like (db=superfamily db_id=SSF56784 from=4 to=268 evalue=1.9e-67)
ACD20_128_20

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19503..20003
DNA (501bp) protein (167aa)
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
ISPF (db=PatternScan db_id=PS01350 from=39 to=54 evalue=0.0 interpro_id=IPR020555 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site)
ispF: 2C-methyl-D-erythritol 2,4-cyclodiphos (db=HMMTigr db_id=TIGR00151 from=6 to=160 evalue=2.3e-89 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
IpsF-like (db=superfamily db_id=SSF69765 from=5 to=159 evalue=1.8e-63 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
ACD20_128_21

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20318..20473
DNA (156bp) protein (52aa)
20318..20473 + (rbs_motif=GGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02477.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_128_22

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comp(20488..20616)
DNA (129bp) protein (43aa)
20488..20616 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02478.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_128_23

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20939..22042
DNA (1104bp) protein (368aa)
oorA; 2-oxoacid:ferredoxin oxidoreductase subunit alpha
oorA; 2-oxoacid:ferredoxin oxidoreductase subunit alpha
2-oxoacid:ferredoxin oxidoreductase, alpha subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TB24_HELMI (db=UNIREF evalue=2.0e-124 bit_score=449.0 identity=61.67 coverage=97.554347826087)
seg (db=Seg db_id=seg from=21 to=35)
ACD20: four subunits to same TCA cycle enzyme, thus probably has this complex Jill Banfield (11/15/12)
ACD20_128_24

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22123..22890
DNA (768bp) protein (256aa)
2-oxoglutarate synthase (EC:1.2.7.3)
2-oxoglutarate synthase (EC:1.2.7.3)
Thiamine pyrophosphate protein domain protein TPP-binding protein n=1 Tax=Thermincola sp. JR RepID=D5X8X3_9FIRM (db=UNIREF evalue=1.0e-90 bit_score=336.0 identity=61.85 coverage=96.484375)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=13 to=240 evalue=1.6e-48)
ACD20_128_25

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22890..23453
DNA (564bp) protein (188aa)
oorC; 2-oxoacid:ferredoxin oxidoreductase subunit gamma
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III (db=superfamily db_id=SSF53323 from=2 to=183 evalue=7.1e-33 interpro_id=IPR002869 interpro_description=Pyruvate-flavodoxin oxidoreductase, central domain GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
POR (db=HMMPfam db_id=PF01558 from=12 to=178 evalue=3.6e-32 interpro_id=IPR019752 interpro_description=Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO=Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors (GO:0016903), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:3.40.920.10 from=2 to=183 evalue=1.9e-24 interpro_id=IPR019752 interpro_description=Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO=Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors (GO:0016903), Biological Process: oxidation reduction (GO:0055114))
ACD20_128_26

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23490..23768
DNA (279bp) protein (93aa)
4Fe-4S ferredoxin
seg (db=Seg db_id=seg from=28 to=39)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=70 to=81 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=29 to=40 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_128_27

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23988..24398
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=64 to=87)
seg (db=Seg db_id=seg from=119 to=134)
Uncharacterized protein {ECO:0000313|EMBL:EKE02483.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 27 items

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