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MEL_C3_68

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_C3_68_1
unknown

Not on your lists

71..2602
DNA (2532bp) protein (844aa)
seg (db=Seg db_id=seg from=719 to=732)
seg (db=Seg db_id=seg from=527 to=536)
seg (db=Seg db_id=seg from=323 to=336)
coiled-coil (db=Coil db_id=coil from=319 to=340 evalue=NA)
MEL_C3_68_2
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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2650..3255
DNA (606bp) protein (202aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=2 to=12)
seg (db=Seg db_id=seg from=146 to=160)
(db=HMMPfam db_id=PF06835 from=20 to=189 evalue=7.8e-12 interpro_id=IPR010664 interpro_description=Lipopolysccharide assembly, LptC-related)
MEL_C3_68_3
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

3252..4211
DNA (960bp) protein (320aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=87 to=105)
seg (db=Seg db_id=seg from=306 to=319)
(db=HMMPfam db_id=PF03968 from=109 to=219 evalue=2.0e-07 interpro_id=IPR005653 interpro_description=Organic solvent tolerance-like, N-terminal)
MEL_C3_68_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

4189..4386
DNA (198bp) protein (66aa)
4189..4386 + ( gc_cont=0.298)
UPF0102 protein BN676_00017 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira
MEL_C3_68_5
unknown

Not on your lists

4471..4671
DNA (201bp) protein (67aa)
4471..4671 + ( gc_cont=0.254)
MEL_C3_68_6
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(5612..6154)
DNA (543bp) protein (181aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=21 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=99)
MEL_C3_68_7
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(6346..7110)
DNA (765bp) protein (255aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
AA_TRANSFER_CLASS_4 (db=PatternScan db_id=PS00770 from=139 to=168 evalue=0.0 interpro_id=IPR018300 interpro_description=Aminotransferase, class IV, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE (db=HMMPanther db_id=PTHR11825:SF7 from=1 to=253 evalue=1.1e-91)
SUBGROUP IIII AMINOTRANSFERASE (db=HMMPanther db_id=PTHR11825 from=1 to=253 evalue=1.1e-91 interpro_id=IPR001544 interpro_description=Aminotransferase, class IV GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
MEL_C3_68_8
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(7249..7491)
DNA (243bp) protein (81aa)
7249..7491 - ( gc_cont=0.305)
Uncharacterized protein {ECO:0000313|EMBL:CDC19784.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_C3_68_9
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

7762..8505
DNA (744bp) protein (248aa)
TPR domain-containing protein
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=15 to=219 evalue=1.9e-40 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=32 to=218 evalue=3.4e-33)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=11 to=247 evalue=6.3e-27)
MEL_C3_68_10
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

8582..9511
DNA (930bp) protein (310aa)
seg (db=Seg db_id=seg from=251 to=263)
seg (db=Seg db_id=seg from=11 to=25)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=307 evalue=1.4e-62)
no description (db=Gene3D db_id=G3DSA:3.40.1190.20 from=5 to=301 evalue=3.1e-61)
MEL_C3_68_11
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

9501..10553
DNA (1053bp) protein (351aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
seg (db=Seg db_id=seg from=230 to=242)
S_layer_CsaB: polysaccharide pyruvyl tra (db=HMMTigr db_id=TIGR03609 from=8 to=307 evalue=3.5e-78 interpro_id=IPR019896 interpro_description=Polysaccharide pyruvyl transferase, CsaB)
(db=HMMPfam db_id=PF04230 from=19 to=285 evalue=1.3e-38 interpro_id=IPR007345 interpro_description=Polysaccharide pyruvyl transferase)
Displaying 11 items

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