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13_1_20cm_4_scaffold_38

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_38_1
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..7281)
DNA (7281bp) protein (2427aa)
Ig domain protein group 1 domain protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB7_DELAS rbh
Uncharacterized protein {ECO:0000313|EMBL:KEH06816.1}; Flags: Fragment;; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia
Ig domain-containing protein rbh
13_1_20cm_4_scaffold_38_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8129..9460
DNA (1332bp) protein (444aa)
D-amino-acid dehydrogenase {ECO:0000313|EMBL:ABX33174.1}; EC=1.4.99.1 {ECO:0000313|EMBL:ABX33174.1};; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
D-amino-acid dehydrogenase (EC:1.4.99.1) rbh
D-amino-acid dehydrogenase n=2 Tax=Delftia RepID=A9BRB6_DELAS rbh
13_1_20cm_4_scaffold_38_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9484..10719)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB5_DELAS rbh
Uncharacterized protein {ECO:0000313|EMBL:ABX33173.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
hypothetical protein
13_1_20cm_4_scaffold_38_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10796..11752)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB4_DELAS rbh
Uncharacterized protein {ECO:0000313|EMBL:ABX33172.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
hypothetical protein
13_1_20cm_4_scaffold_38_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11895..12407)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB3_DELAS rbh
Uncharacterized protein {ECO:0000313|EMBL:ABX33171.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
hypothetical protein
13_1_20cm_4_scaffold_38_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12504..12863)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB2_DELAS
Uncharacterized protein {ECO:0000313|EMBL:ABX33170.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
hypothetical protein
13_1_20cm_4_scaffold_38_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12983..13645
DNA (663bp) protein (221aa)
Glutathione S-transferase domain n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB1_DELAS rbh
Glutathione S-transferase domain {ECO:0000313|EMBL:ABX33169.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovor
glutathione S-transferase domain-containing protein
13_1_20cm_4_scaffold_38_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13664..15871)
DNA (2208bp) protein (736aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD sub
exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)
Exodeoxyribonuclease V, alpha subunit n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRB0_DELAS rbh
13_1_20cm_4_scaffold_38_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15868..19692)
DNA (3825bp) protein (1275aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD sub
Exodeoxyribonuclease V, beta subunit n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA9_DELAS rbh
exodeoxyribonuclease V subunit beta
13_1_20cm_4_scaffold_38_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19689..23234)
DNA (3546bp) protein (1182aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD sub
Exodeoxyribonuclease V, gamma subunit n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA8_DELAS rbh
exodeoxyribonuclease V subunit gamma rbh
13_1_20cm_4_scaffold_38_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23284..23736)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA7_DELAS
Uncharacterized protein {ECO:0000313|EMBL:ABX33165.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (stra
hypothetical protein
13_1_20cm_4_scaffold_38_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23733..24173)
DNA (441bp) protein (147aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA6_DELAS
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABX33164.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delft
BadM/Rrf2 family transcriptional regulator
13_1_20cm_4_scaffold_38_13
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24187..24336)
DNA (150bp) protein (50aa)
NnrS family protein n=1 Tax=Chryseobacterium taeanense RepID=UPI00037430FD
NnrS family protein {ECO:0000313|EMBL:EZP49714.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
13_1_20cm_4_scaffold_38_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24458..24787
DNA (330bp) protein (110aa)
Cupin 2 conserved barrel domain protein n=3 Tax=Delftia acidovorans RepID=A9BRA5_DELAS
Uncharacterized protein {ECO:0000313|EMBL:EPD34463.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
cupin
13_1_20cm_4_scaffold_38_trna_2
unknown

Not on your lists

comp(24892..24964)
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_38_15
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25031..25702)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, Fis family n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA4_DELAS rbh
Two component transcriptional regulator, Fis family {ECO:0000313|EMBL:EZP49716.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" sour
two component Fis family transcriptional regulator
13_1_20cm_4_scaffold_38_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25744..28086)
DNA (2343bp) protein (781aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Del
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA3_DELAS rbh
PAS/PAC sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_38_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28083..28766)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AN24_DELSC rbh
Uncharacterized protein {ECO:0000313|EMBL:KFJ13900.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseud
hypothetical protein
13_1_20cm_4_scaffold_38_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28711..30099)
DNA (1389bp) protein (463aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
Sun protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA1_DELAS rbh
sun protein
13_1_20cm_4_scaffold_38_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30096..30725)
DNA (630bp) protein (210aa)
LemA n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BRA0_DELAS rbh
LemA {ECO:0000313|EMBL:ABX33158.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-
hypothetical protein
13_1_20cm_4_scaffold_38_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30861..35090)
DNA (4230bp) protein (1410aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=RPOC_DELAS rbh
DNA-directed RNA polymerase subunit beta'
13_1_20cm_4_scaffold_38_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35114..39226)
DNA (4113bp) protein (1371aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=RPOB_DELAS rbh
rpoB; DNA-directed RNA polymerase subunit beta
13_1_20cm_4_scaffold_38_22
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(39503..39880)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=5 Tax=Bacteria RepID=RL7_DELAS
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhat
rplL; 50S ribosomal protein L7/L12
13_1_20cm_4_scaffold_38_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(39918..40445)
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=2 Tax=Delftia RepID=RL10_DELAS rbh
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans
rplJ; 50S ribosomal protein L10
13_1_20cm_4_scaffold_38_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40672..41367)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=RL1_DELAS rbh
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans
rplA; 50S ribosomal protein L1
13_1_20cm_4_scaffold_38_25
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(41368..41799)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=4 Tax=Delftia RepID=RL11_DELAS
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia
50S ribosomal protein L11
13_1_20cm_4_scaffold_38_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41941..42525)
DNA (585bp) protein (195aa)
Transcription termination/antitermination protein NusG n=2 Tax=Delftia RepID=A9BR93_DELAS rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
NusG antitermination factor
13_1_20cm_4_scaffold_38_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42525..42908)
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=4 Tax=Delftia RepID=A9BR92_DELAS
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acid
preprotein translocase subunit SecE
13_1_20cm_4_scaffold_38_trna_1
unknown

Not on your lists

comp(42998..43070)
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_38_28
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43080..43235)
DNA (156bp) protein (52aa)
translation elongation factor Tu (EC:2.7.7.4)
Elongation factor Tu n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AM22_DELSC
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteri
Displaying 30 items

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