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13_1_40cm_scaffold_2268

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2268_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(3..920)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0N5_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL98822.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
13_1_40cm_scaffold_2268_trna_1
unknown

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comp(1409..1481)
DNA (73bp)
transferRNA
13_1_40cm_scaffold_2268_2
unknown

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comp(1738..2001)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_scaffold_2268_3
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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2161..2520
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XJK5_DESMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH76752.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovib
13_1_40cm_scaffold_2268_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2544..4688
DNA (2145bp) protein (715aa)
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_1_40cm_scaffold_2268_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4685..6256
DNA (1572bp) protein (524aa)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoacid:ferredoxin oxidoreductase, gamma subunit id=1906446 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit
13_1_40cm_scaffold_2268_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6253..6966)
DNA (714bp) protein (238aa)
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sigma-54 factor interaction domain-containing protein id=2883274 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_scaffold_2268_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

7078..7431
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_1_40cm_scaffold_2268_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7484..7813)
DNA (330bp) protein (110aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_2268_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8038..8442
DNA (405bp) protein (135aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14626931 bin=bin7_NC10_sister species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C
13_1_40cm_scaffold_2268_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8468..9103
DNA (636bp) protein (212aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14626930 bin=bin7_NC10_sister species=Bradyrhizobium elkanii genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2268_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9202..10365
DNA (1164bp) protein (388aa)
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
nuoD; NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I, chain D) (NDH-1, chain D) (EC:1.6.5.3 1.6.99.5) id=14626929 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5)
13_1_40cm_scaffold_2268_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10362..11267
DNA (906bp) protein (302aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH dehydrogenase subunit H (EC:1.6.5.3); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=14626928 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase subunit H (EC:1.6.5.3)
13_1_40cm_scaffold_2268_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11257..11832
DNA (576bp) protein (192aa)
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
nuoI; NADH-quinone oxidoreductase subunit I (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=14626927 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5)
13_1_40cm_scaffold_2268_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11829..12323
DNA (495bp) protein (165aa)
proton-translocating NADH-quinone oxidoreductase subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I, chain 6) (NDH-1, chain 6) id=3051773 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proton-translocating NADH-quinone oxidoreductase subunit J
13_1_40cm_scaffold_2268_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12320..12622
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=14626925 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nuoK; NADH-quinone oxidoreductase chain K
13_1_40cm_scaffold_2268_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12627..14444
DNA (1818bp) protein (606aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=14626924 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_40cm_scaffold_2268_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14449..15993
DNA (1545bp) protein (515aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] id=14626923 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
13_1_40cm_scaffold_2268_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15990..17402
DNA (1413bp) protein (471aa)
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] id=14626922 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5)
13_1_40cm_scaffold_2268_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17830..18150
DNA (321bp) protein (107aa)
TetR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TetR family transcriptional regulator id=14626921 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TetR family transcriptional regulator
13_1_40cm_scaffold_2268_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18147..18758
DNA (612bp) protein (204aa)
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_scaffold_2268_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


18856..19167
DNA (312bp) protein (104aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L21 id=3966269 bin=GWA2_Elusimicrobia_69_24 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
50S ribosomal protein L21
13_1_40cm_scaffold_2268_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


19174..19431
DNA (258bp) protein (86aa)
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L27 id=3966268 bin=GWA2_Elusimicrobia_69_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
50S ribosomal protein L27
Displaying 23 items

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