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13_1_40cm_scaffold_3905

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3905_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14..280)
DNA (267bp) protein (89aa)
MmgE/PrpD Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
MmgE/PrpD family protein id=1901314 bin=GWD2_Deltaproteobacteria_55_8 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MmgE/PrpD family protein
13_1_40cm_scaffold_3905_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(500..958)
DNA (459bp) protein (153aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] Tax=GWA2_Rokubacteria_73_35_curated
Histidinol-phosphate phosphatase, putative id=4961242 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hisN; histidinol-phosphate phosphatase
13_1_40cm_scaffold_3905_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1255..2160
DNA (906bp) protein (302aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase id=4226582 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3905_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2349..3995
DNA (1647bp) protein (549aa)
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4810577 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter ATP-binding protein/membrane protein
13_1_40cm_scaffold_3905_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3988..6087
DNA (2100bp) protein (700aa)
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4810578 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter ATP-binding protein/membrane protein
13_1_40cm_scaffold_3905_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6125..6886
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=4889334 bin=GWC2_Methylomirabilis_70_24 species=Halobacterium sp. DL1 genus=Halobacterium taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_3905_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7146..8075
DNA (930bp) protein (310aa)
hypothetical protein; K07022 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0282 protein MK0213 id=4810582 bin=GWC2_Methylomirabilis_70_16 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Hypothetical protein
13_1_40cm_scaffold_3905_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8072..8218
DNA (147bp) protein (49aa)
Uncharacterized protein id=4810583 bin=GWC2_Methylomirabilis_70_16 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_3905_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8228..8539
DNA (312bp) protein (104aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4889331 bin=GWC2_Methylomirabilis_70_24 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alkyl hydroperoxide reductase
13_1_40cm_scaffold_3905_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8574..9044
DNA (471bp) protein (157aa)
Cyclase/dehydrase id=2720984 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cyclase/dehydrase Tax=GWA2_Rokubacteria_73_35_curated
cyclase/dehydrase
13_1_40cm_scaffold_3905_11
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(9025..9996)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000371A665
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
hypothetical protein
13_1_40cm_scaffold_3905_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10032..10910
DNA (879bp) protein (293aa)
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] id=14626140 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=CSP1_6_Rokubacteria
apurinic endonuclease Apn1 (EC:3.1.21.2)
13_1_40cm_scaffold_3905_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10730..11671)
DNA (942bp) protein (314aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endonuclease III id=2720983 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Endonuclease III
13_1_40cm_scaffold_3905_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11683..12231)
DNA (549bp) protein (183aa)
Putative uncharacterized protein id=2720981 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3905_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12565..13020
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=4226436 bin=GWF2_Methylomirabilis_70_14 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_3905_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12992..13387)
DNA (396bp) protein (132aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2720971 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3905_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13762..14994)
DNA (1233bp) protein (411aa)
Export ABC transporter permease id=2720746 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3905_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14991..15740)
DNA (750bp) protein (250aa)
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative transporter subunit: ATP-binding component of ABC superfamily id=2720745 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein
13_1_40cm_scaffold_3905_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15743..17419)
DNA (1677bp) protein (559aa)
putative Efflux transporter, RND family, MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Efflux transporter, RND family, MFP subunit id=2720744 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RND family efflux transporter MFP subunit
13_1_40cm_scaffold_3905_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17463..18791)
DNA (1329bp) protein (443aa)
Type I secretion outer membrane protein id=2720743 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type I secretion outer membrane protein Tax=GWA2_Rokubacteria_73_35_curated
type I secretion outer membrane protein
13_1_40cm_scaffold_3905_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19324..21189
DNA (1866bp) protein (622aa)
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonucleoside-diphosphate reductase id=4810597 bin=GWC2_Methylomirabilis_70_16 species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonucleoside-diphosphate reductase class II
13_1_40cm_scaffold_3905_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22122..22523
DNA (402bp) protein (134aa)
cytochrome c family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c class I id=2720737 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c class I
13_1_40cm_scaffold_3905_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22570..23460
DNA (891bp) protein (297aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] Tax=GWC2_Rokubacteria_70_16_curated
Ppx/GppA phosphatase id=4810602 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Exopolyphosphatase
13_1_40cm_scaffold_3905_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23503..24033
DNA (531bp) protein (177aa)
HNH endonuclease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HNH endonuclease id=14625779 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
HNH endonuclease
13_1_40cm_scaffold_3905_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24048..24560
DNA (513bp) protein (171aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=GWA2_Rokubacteria_73_35_curated
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B id=14625778 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
excinuclease ABC subunit B
Displaying 25 items

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