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13_1_40cm_4_scaffold_1884

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1884_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2..769
DNA (768bp) protein (256aa)
asparagine synthetase (EC:6.3.5.4)
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=mine drainage metagenome RepID=T1ANX4_9ZZZZ
asparagine synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_1884_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

766..1353
DNA (588bp) protein (196aa)
Metal dependent phosphohydrolase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJK6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_1884_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1350..2756
DNA (1407bp) protein (469aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG15_9GAMM
phospholipase D/transphosphatidylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phospholipase
13_1_40cm_4_scaffold_1884_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2749..3345
DNA (597bp) protein (199aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q9_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_4_scaffold_1884_5
unknown

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3342..3689
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_4_scaffold_1884_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3712..4125
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=3180377 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_40cm_4_scaffold_1884_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4122..5462
DNA (1341bp) protein (447aa)
Putative outer membrane macrolide efflux protein n=2 Tax=Myxococcus RepID=Q1D4Q0_MYXXD id=5224473 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane macrolide efflux protein Tax=RBG_16_RIF_WS3X_71_46_curated
outer membrane macrolide efflux protein
13_1_40cm_4_scaffold_1884_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5459..6202
DNA (744bp) protein (248aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H8_GEMAT
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1884_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6199..7635
DNA (1437bp) protein (479aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative macrolide-specific efflux protein MacA
13_1_40cm_4_scaffold_1884_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7638..8852
DNA (1215bp) protein (405aa)
Putative macrolide efflux ABC transporter permease n=3 Tax=Myxococcus RepID=F8CKF2_MYXFH id=5224471 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative macrolide efflux ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative macrolide efflux ABC transporter permease
13_1_40cm_4_scaffold_1884_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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9423..11225
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9E2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_1884_12
unknown

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comp(11238..12047)
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_40cm_4_scaffold_1884_13
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12190..12837
DNA (648bp) protein (216aa)
Methyl-accepting chemotaxis transducer n=1 Tax=Aeromonas diversa 2478-85 RepID=N9VKD4_9GAMM
Methyl-accepting chemotaxis transducer {ECO:0000313|EMBL:ENY72093.1}; TaxID=1268237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromona
PAS domain protein S-box
13_1_40cm_4_scaffold_1884_14
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

12855..13760
DNA (906bp) protein (302aa)
pirin; K06911 Tax=GWA2_Ignavibacteria_54_16_curated
hypothetical protein; K06911 id=24497726 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pirin
13_1_40cm_4_scaffold_1884_15
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13747..15123)
DNA (1377bp) protein (459aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQU8_KYRT2
amidohydrolase domain-containing protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
amidohydrolase
13_1_40cm_4_scaffold_1884_16
unknown

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comp(15128..15646)
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_4_scaffold_1884_17
unknown

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15755..16054
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_4_scaffold_1884_18
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

16263..16703
DNA (441bp) protein (147aa)
Predicted protein n=1 Tax=Streptomyces sp. C RepID=D9VL49_9ACTO
bioH; pimeloyl-CoA synthesis protein Tax=RBG_16_Chloroflexi_63_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1884_19
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16986..17711
DNA (726bp) protein (242aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RMS2_9CYAN
Haloacid dehalogenase {ECO:0000313|EMBL:KIE12424.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
haloacid dehalogenase superfamily protein
13_1_40cm_4_scaffold_1884_20
unknown

Not on your lists

comp(17708..18079)
DNA (372bp) protein (124aa)

This feature has no annotations

13_1_40cm_4_scaffold_1884_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

18243..18767
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UT59_ROSS1
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative restriction endonuclease
13_1_40cm_4_scaffold_1884_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18773..20725)
DNA (1953bp) protein (651aa)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (EC:2.4.1.25) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) (EC:2.4.1.25)
Putative 4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLP9_9BACT
13_1_40cm_4_scaffold_1884_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20727..22166)
DNA (1440bp) protein (480aa)
Glycoside hydrolase, family 57 n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AU40_PELPD
Protein of unknown function DUF3536
Uncharacterized protein {ECO:0000313|EMBL:AHG87964.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_1884_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22172..22822)
DNA (651bp) protein (217aa)
putative alpha-amylase (EC:3.2.1.1) id=24483490 bin=RBG_19FT_COMBO_GAL15_69_19 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
alpha-amylase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
alpha-amylase
13_1_40cm_4_scaffold_1884_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22848..23789)
DNA (942bp) protein (314aa)
putative alpha-amylase (EC:3.2.1.1) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative alpha-amylase (EC:3.2.1.1)
Glycoside hydrolase family 57 id=3927648 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1884_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23801..24637)
DNA (837bp) protein (279aa)
glgA; glycogen synthase (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glgA; glycogen synthase (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A847_GEMAT
Displaying 26 items

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