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13_1_40cm_4_scaffold_6077

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6077_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(3..266)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SI1_SOLUE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_4_scaffold_6077_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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405..2135
DNA (1731bp) protein (577aa)
DNA Polymerase X family n=6 Tax=Coxiella burnetii RepID=A9KEA4_COXBN
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA-binding/PHP domain-containing protein
13_1_40cm_4_scaffold_6077_3
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(2110..2754)
DNA (645bp) protein (215aa)
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7S7_SPHTD
13_1_40cm_4_scaffold_6077_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2751..3128)
DNA (378bp) protein (126aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_40cm_4_scaffold_6077_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3133..3819)
DNA (687bp) protein (229aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_1_40cm_4_scaffold_6077_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3806..4036)
DNA (231bp) protein (77aa)
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_6077_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(4075..4332)
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Caloramator australicus RC3 RepID=G0V3Z5_9CLOT
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
30S ribosomal protein S16
13_1_40cm_4_scaffold_6077_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4337..5671)
DNA (1335bp) protein (445aa)
Signal recognition particle protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY3_GEMAT
Signal recognition 54 kDa protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadete
13_1_40cm_4_scaffold_6077_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5724..6953)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_6077_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(6950..8146)
DNA (1197bp) protein (399aa)
ATPase n=1 Tax=Thermobifida fusca (strain YX) RepID=Q47TH6_THEFY
AAA ATPase central domain protein
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6077_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(8152..8991)
DNA (840bp) protein (280aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_1_40cm_4_scaffold_6077_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(8981..9682)
DNA (702bp) protein (234aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B408_DESCC
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase (SpoU)
13_1_40cm_4_scaffold_6077_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9774..10655
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00036F3258
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:AHG91371.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_6077_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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10666..11493
DNA (828bp) protein (276aa)
Phosphomethylpyrimidine kinase (ThiD) n=2 Tax=Thermus thermophilus RepID=Q5SKG3_THET8
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphomethylpyrimidine kinase ThiD
13_1_40cm_4_scaffold_6077_15
unknown

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comp(11692..11883)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_6077_16
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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12141..12851
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DI36_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ35110.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
13_1_40cm_4_scaffold_6077_17
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(12889..15540)
DNA (2652bp) protein (884aa)
membrane associated hydrolase Tax=GWC2_Ignavibacteria_rel_36_12_curated
Putative membrane associated hydrolase id=4183989 bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
membrane associated hydrolase
13_1_40cm_4_scaffold_6077_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15695..16531)
DNA (837bp) protein (279aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ0_GEMAT
13_1_40cm_4_scaffold_6077_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16528..17931)
DNA (1404bp) protein (468aa)
Putative Na+(H+)/nucleoside cotransporter n=1 Tax=mine drainage metagenome RepID=E6QL85_9ZZZZ
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Na+ dependent nucleoside transporter
13_1_40cm_4_scaffold_6077_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17931..19178)
DNA (1248bp) protein (416aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Adenosine deaminase n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DC52_MYXXD
adenosine deaminase
13_1_40cm_4_scaffold_6077_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19175..20752)
DNA (1578bp) protein (526aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
2',3'-cyclic-nucleotide 2'-phosphodiesterase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] id=24473036 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
5'-Nucleotidase domain-containing protein
13_1_40cm_4_scaffold_6077_22
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20806..21696
DNA (891bp) protein (297aa)
Putative hydrolase (Metallo-beta-lactamase superfamily) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN56_SINAD
hydrolase
Putative hydrolase (Metallo-beta-lactamase superfamily) {ECO:0000313|EMBL:AGA30809.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphae
13_1_40cm_4_scaffold_6077_23
unknown

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21702..21977
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_4_scaffold_6077_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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21974..22726
DNA (753bp) protein (251aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ5_GEMAT
phoB; phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curat
phoB; phosphate regulon transcriptional regulatory protein PhoB
13_1_40cm_4_scaffold_6077_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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22723..24450
DNA (1728bp) protein (576aa)
phoR; phosphate regulon sensor protein PhoR; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curat
Phosphate regulon sensor protein PhoR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ6_GEMAT
phoR; phosphate regulon sensor protein PhoR
13_1_40cm_4_scaffold_6077_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

24668..25153
DNA (486bp) protein (162aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ5_GEMAT
phoB; phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curat
phoB; phosphate regulon transcriptional regulatory protein PhoB
13_1_40cm_4_scaffold_6077_27
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(25167..25976)
DNA (810bp) protein (270aa)
polyphosphate:AMP phosphotransferase (EC:2.7.4.-)
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:ABJ82079.1}; EC=2.7.4.- {ECO:0000313|EMBL:ABJ82079.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacterac
Polyphosphate:AMP phosphotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A47_SOLUE
13_1_40cm_4_scaffold_6077_28
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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26160..27008
DNA (849bp) protein (283aa)
Ppx/GppA phosphatase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0I0_9PLAN
Ppx/GppA phosphatase {ECO:0000313|EMBL:EAQ77800.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula mari
gppA-2; pppGpp 5'-phosphohydrolase and exopolyphosphatase, HD domain-containing
Displaying 28 items

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