ggKbase home page

13_2_20cm_2_scaffold_6801

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_2_scaffold_6801_1
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1031)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI00037E03EB
peptidase M24
Peptidase M24 {ECO:0000313|EMBL:ADU50423.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacte
13_2_20cm_2_scaffold_6801_2
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(1123..2091)
DNA (969bp) protein (323aa)
Transketolase central region n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GCD9_CHLAD
transketolase
Transketolase central region {ECO:0000313|EMBL:ACL24983.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chlorof
13_2_20cm_2_scaffold_6801_3
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2137..3039
DNA (903bp) protein (301aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HP72_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidami
whiA; sporulation transcription regulator
13_2_20cm_2_scaffold_6801_4
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3156..4256
DNA (1101bp) protein (367aa)
HNH endonuclease n=1 Tax=Frankia sp. CN3 RepID=G6H5X6_9ACTO
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:CCG05786.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).
13_2_20cm_2_scaffold_6801_5
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4310..4957
DNA (648bp) protein (216aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E0_9ACTO
13_2_20cm_2_scaffold_6801_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

4929..5198
DNA (270bp) protein (90aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RBG_16_Acidobacteria_70_10_curated
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Dehalococcoides sp. (strain VS) RepID=D2BH83_DEHSV
gap; glyceraldehyde-3-phosphate dehydrogenase, type I
13_2_20cm_2_scaffold_6801_7
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

5243..6361
DNA (1119bp) protein (373aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=926569 species="Bacteria;
Phosphoglycerate kinase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N4J2_ANATU
13_2_20cm_2_scaffold_6801_8
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

6362..7153
DNA (792bp) protein (264aa)
tpiA; triose-phosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RBG_16_Chloroflexi_50_9_curated
triosephosphate isomerase n=2 Tax=Chloroflexi bacterium oral taxon 439 RepID=UPI0003B4FE7E
TpiA; triosephosphate isomerase
13_2_20cm_2_scaffold_6801_9
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

7140..7919
DNA (780bp) protein (260aa)
phosphoglycerate mutase (EC:5.4.2.1); K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1] Tax=RBG_16_Actinobacteria_68_21_curated
gpmA; phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase id=2797451 bin=GWF2_Syntrophobacterales_56_9 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
13_2_20cm_2_scaffold_6801_10
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7968..8465
DNA (498bp) protein (166aa)
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" so
Superoxide dismutase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WSQ9_KYRT2
13_2_20cm_2_scaffold_6801_11
unknown

Not on your lists

8494..8751
DNA (258bp) protein (86aa)

This feature has no annotations

13_2_20cm_2_scaffold_6801_12
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

8843..10348
DNA (1506bp) protein (502aa)
Extracellular solute-binding protein family 5 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEG0_9CHLR
putative ABC transporter substrate binding protein Tax=RBG_16_Chloroflexi_57_9_curated
family 5 extracellular solute-binding protein
13_2_20cm_2_scaffold_6801_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

10359..11546
DNA (1188bp) protein (396aa)
aspartate/tyrosine/aromatic aminotransferase id=24475222 bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
aspartate/tyrosine/aromatic aminotransferase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
class I and II aminotransferase
13_2_20cm_2_scaffold_6801_14
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11573..11818
DNA (246bp) protein (82aa)
fdhA; Formate dehydrogenase subunit alpha (EC:1.2.1.2)
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:AIG76260.1}; EC=1.2.1.2 {ECO:0000313|EMBL:AIG76260.1};; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amy
formate dehydrogenase n=1 Tax=Demetria terragena RepID=UPI00036BB9D1
13_2_20cm_2_scaffold_6801_15
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

11849..13480
DNA (1632bp) protein (544aa)
molybdopterin oxidoreductase; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=GWC2_RIF_CHLX_73_18_curated
nitrate reductase (EC:1.7.99.4)
Formate dehydrogenase id=4954719 bin=GWC2_Chloroflexi_73_18 species=Nocardiopsis dassonvillei genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
13_2_20cm_2_scaffold_6801_16
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

13481..15136
DNA (1656bp) protein (552aa)
Putative respiratory chain oxidoreductase n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C0X5_STRBB
nuoF; NADH dehydrogenase I subunit F Tax=RBG_16_RIF_CHLX_69_14_curated
nuoF; putative respiratory chain oxidoreductase
13_2_20cm_2_scaffold_6801_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

15129..15998
DNA (870bp) protein (290aa)
formate dehydrogenase alpha subunit Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
molybdopterin oxidoreductase Fe4S4 region id=14630536 bin=bin8_Chloro species=Nocardiopsis sp. CNS639 genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
nuoG2; NADH dehydrogenase I chain G
13_2_20cm_2_scaffold_6801_18
unknown

Not on your lists

comp(16056..16460)
DNA (405bp) protein (135aa)

This feature has no annotations

13_2_20cm_2_scaffold_6801_19
unknown

Not on your lists

comp(16465..16998)
DNA (534bp) protein (178aa)

This feature has no annotations

13_2_20cm_2_scaffold_6801_20
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16985..17572)
DNA (588bp) protein (196aa)
RNA polymerase sigma-E factor n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UTS9_9ACTO
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:KJR11591.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
sigma-70 family RNA polymerase
13_2_20cm_2_scaffold_6801_21
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

17636..18187
DNA (552bp) protein (184aa)
HhH-GPD family protein Tax=RBG_16_RIF_CHLX_69_14_curated
HhH-GPD family protein id=14629871 bin=bin8_Chloro species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
HhH-GPD family protein
13_2_20cm_2_scaffold_6801_22
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18525..19598
DNA (1074bp) protein (358aa)
Anthranilate synthase, aminase component {ECO:0000313|EMBL:CEL18410.1}; EC=4.1.3.27 {ECO:0000313|EMBL:CEL18410.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiacea
trpE1; Anthranilate synthase component 1 (EC:4.1.3.27)
anthranilate synthase n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002F74299
13_2_20cm_2_scaffold_6801_23
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19598..20176
DNA (579bp) protein (193aa)
Anthranilate synthase, amidotransferase component @ Para-aminobenzoate synthase, amidotransferase component {ECO:0000313|EMBL:CEL18409.1}; EC=2.6.1.85 {ECO:0000313|EMBL:CEL18409.1};; EC=4.1.3.27 {ECO:
trpGD; Anthranilate synthase component II (EC:4.1.3.27)
Anthranilate synthase, amidotransferase component n=3 Tax=Streptomyces RepID=S1SYU9_STRLI
13_2_20cm_2_scaffold_6801_24
CG_Elusi_02, Elusimicrobia, Bacteria

Not on your lists

20173..20331
DNA (159bp) protein (53aa)
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=CG_Elusi_02
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037E24FF
Displaying 24 items

View Taxonomy