ggKbase home page

13_1_40cm_2_scaffold_1173

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1173_1
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1..198)
DNA (198bp) protein (66aa)
aminotransferase (EC:2.6.1.-)
aminotransferase class-III Tax=CG_Ignavi_01
Aminotransferase id=4718609 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_40cm_2_scaffold_1173_2
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(195..857)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZR12_MELRP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFN74499.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter r
13_1_40cm_2_scaffold_1173_3
Prevotella sp. CAG:1092, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1025..1729)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1092 RepID=R5P8W8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ12508.1}; TaxID=1262919 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotel
nucleoside-diphosphate-sugar pyrophosphorylase
13_1_40cm_2_scaffold_1173_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1731..2315)
DNA (585bp) protein (195aa)
Putative HAD-superfamily hydrolase, subfamily IA, variant 3 id=4870510 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
HAD-superfamily hydrolase, subfamily IA, variant 3 Tax=GWA2_Rokubacteria_70_23_curated
HAD-superfamily hydrolase, subfamily IA, variant 3
13_1_40cm_2_scaffold_1173_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2410..3510)
DNA (1101bp) protein (367aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_2_scaffold_1173_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3557..4420)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A779_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_2_scaffold_1173_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4377..4979)
DNA (603bp) protein (201aa)
SNARE associated Golgi protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H6Q7_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_2_scaffold_1173_8
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(4976..5365)
DNA (390bp) protein (130aa)
Tax=BJP_IG2069_Spirochaetales_48_31
13_1_40cm_2_scaffold_1173_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5450..7816)
DNA (2367bp) protein (789aa)
transcriptional activator domain-containing protein n=1 Tax=Streptomyces chartreusis RepID=UPI000262D6DA
transcriptional activator domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
transcriptional activator domain-containing protein
13_1_40cm_2_scaffold_1173_10
unknown

Not on your lists

9288..10019
DNA (732bp) protein (244aa)

This feature has no annotations

13_1_40cm_2_scaffold_1173_11
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10052..11191)
DNA (1140bp) protein (380aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEZ2_ANADF
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ABS27288.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromy
13_1_40cm_2_scaffold_1173_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11248..13116)
DNA (1869bp) protein (623aa)
Transcriptional activator domain n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1B2_ROSS1
transcriptional activator domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
transcriptional activator domain-containing protein
13_1_40cm_2_scaffold_1173_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13113..15941)
DNA (2829bp) protein (943aa)
Putative Serine/threonine protein kinase PrkC regulator of stationary phase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0X8_9ACTN
protein kinase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_2_scaffold_1173_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16036..16518)
DNA (483bp) protein (161aa)
Blue-copper protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4M3_GEMAT
blue-copper protein Tax=GWC2_Gemmatimonadetes_71_10_curated
blue (type 1) copper domain protein
13_1_40cm_2_scaffold_1173_15
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16650..17807
DNA (1158bp) protein (386aa)
Beta-lactamase domain-containing protein n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9E439_9BACL
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EJY55721.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacil
rhodanese
13_1_40cm_2_scaffold_1173_16
unknown

Not on your lists

comp(17809..18144)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_2_scaffold_1173_17
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

18281..20428
DNA (2148bp) protein (716aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I866_CALAS
hypothetical protein; K07114 uncharacterized protein Tax=CG_Anaero_02
hypothetical protein
13_1_40cm_2_scaffold_1173_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20528..21031
DNA (504bp) protein (168aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC64_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase ECF-type sigma factor
13_1_40cm_2_scaffold_1173_19
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

21015..22040
DNA (1026bp) protein (342aa)
hypothetical protein Tax=RBG_16_Armatimonadetes_67_12_curated
13_1_40cm_2_scaffold_1173_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22571..23782)
DNA (1212bp) protein (404aa)
mopC; protein MopC Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical membrane protein id=24582159 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_40cm_2_scaffold_1173_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(23779..24318)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00036C7D3A
cytochrome c class I Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative cytochrome c subfamily
13_1_40cm_2_scaffold_1173_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24311..24856)
DNA (546bp) protein (182aa)
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical membrane protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical membrane protein
13_1_40cm_2_scaffold_1173_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24853..25155)
DNA (303bp) protein (101aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14426358 bin=bin1_lowGC species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin1_lowGC organism_group=Unknown_CP
Polysulfide reductase NrfD
13_1_40cm_2_scaffold_1173_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25095..26147)
DNA (1053bp) protein (351aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hybB; molybdopterin oxidoreductase; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14429766 bin=bin3_NC10 species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_1173_25
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(26152..29136)
DNA (2985bp) protein (995aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14429767 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=CSP1_5_NC10
putative oxidoreductase
13_1_40cm_2_scaffold_1173_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(29147..29725)
DNA (579bp) protein (193aa)
cytochrome c3 Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c2 id=14426356 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c3
Displaying 26 items

View Taxonomy