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13_1_40cm_2_scaffold_5223

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5223_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(3..707)
DNA (705bp) protein (235aa)
Branched-chain amino acid ABC transporter, permease protein id=4360585 bin=GWC2_Methylomirabilis_70_24 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_2_scaffold_5223_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(729..1790)
DNA (1062bp) protein (354aa)
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative id=4360584 bin=GWC2_Methylomirabilis_70_24 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
putative branched-chain amino acid ABC transporter
13_1_40cm_2_scaffold_5223_3
unknown

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comp(1815..1946)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_2_scaffold_5223_4

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2093..2761
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=uncultured Chloroflexi bacterium HF4000_28F02 RepID=E0XW97_9CHLR
Putative uncharacterized protein {ECO:0000313|EMBL:ADI18688.1}; TaxID=710739 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF4000_28F02.;"
hypothetical protein
13_1_40cm_2_scaffold_5223_5
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2788..3537
DNA (750bp) protein (250aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHA1_ALCDB
oxidoreductase Tax=RBG_13_Deltaproteobacteria_47_9_curated
oxidoreductase
13_1_40cm_2_scaffold_5223_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3555..4376
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G738_GEOUR
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ27606.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter
13_1_40cm_2_scaffold_5223_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4435..4866
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07I23_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08411.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" sourc
13_1_40cm_2_scaffold_5223_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(4888..5595)
DNA (708bp) protein (236aa)
id=14627111 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=14627111 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_5223_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5592..6104)
DNA (513bp) protein (171aa)
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4801469 bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24
13_1_40cm_2_scaffold_5223_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6113..6661)
DNA (549bp) protein (183aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase id=2164593 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_2_scaffold_5223_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(6658..7020)
DNA (363bp) protein (121aa)
folB; dihydroneopterin aldolase (DHNA) (EC:4.1.2.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Dihydroneopterin aldolase id=2164663 bin=GWA2_Methylomirabilis_73_35 species=Streptococcus ictaluri genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydroneopterin aldolase
13_1_40cm_2_scaffold_5223_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7020..7775)
DNA (756bp) protein (252aa)
ureidoglycolate lyase (EC:4.3.2.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase id=14627106 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
13_1_40cm_2_scaffold_5223_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(7783..8640)
DNA (858bp) protein (286aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=GWA2_Rokubacteria_73_35_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=2164669 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_5223_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8648..9502)
DNA (855bp) protein (285aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4801457 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_5223_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9444..10739)
DNA (1296bp) protein (432aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=GWA2_Rokubacteria_73_35_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=2164678 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_5223_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10775..11254)
DNA (480bp) protein (160aa)
Fibronectin, type III Tax=GWA2_Rokubacteria_73_35_curated
Putative Fibronectin, type III id=2164681 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fibronectin type III domain-containing protein
13_1_40cm_2_scaffold_5223_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(11799..13229)
DNA (1431bp) protein (477aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Argininosuccinate lyase id=4231026 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
argininosuccinate lyase
13_1_40cm_2_scaffold_5223_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13226..13897)
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferases id=4231028 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=GWA2_Rokubacteria_73_35_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_2_scaffold_5223_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13919..14935)
DNA (1017bp) protein (339aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=GWA2_Rokubacteria_73_35_curated
aminodeoxychorismate lyase id=14627099 bin=bin7_NC10_sister species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
aminodeoxychorismate lyase
13_1_40cm_2_scaffold_5223_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15017..16009
DNA (993bp) protein (331aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=GWA2_Rokubacteria_73_35_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4231232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_5223_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16013..17248)
DNA (1236bp) protein (412aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=GWA2_Rokubacteria_73_35_curated
dapL1; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase id=4231234 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_5223_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(17260..18066)
DNA (807bp) protein (269aa)
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
ComEC/Rec2-like protein
13_1_40cm_2_scaffold_5223_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18075..19577)
DNA (1503bp) protein (501aa)
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
Metallo-beta-lactamase superfamily
13_1_40cm_2_scaffold_5223_24
unknown

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20205..20330
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 24 items

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